Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D5P entry

There are 2 chains in PDB entry 9D5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 182LYS 452
B
 ALA 249GLU 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9D5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 193Right-handed 310
Helix 2
AA2
A
228 239Right-handed alpha
Helix 3
AA3
A
240 243Right-handed 310
Helix 4
AA4
A
276 283Right-handed alpha
Helix 5
AA5
A
290 310Right-handed alpha
Helix 6
AA6
A
338 340Right-handed 310
Helix 7
AA7
A
352 356Right-handed 310
Helix 8
AA8
A
357 362Right-handed 310
Helix 9
AA9
A
364 368Right-handed 310
Helix 10
AB1
A
369 388Right-handed alpha
Helix 11
AB2
A
396 407Right-handed alpha
Helix 12
AB3
A
418 429Right-handed alpha
Helix 13
AB4
A
432 436Right-handed 310
Helix 14
AB5
A
438 449Right-handed alpha
Helix 15
AB6
B
250 256Right-handed alpha
Helix 16
AB7
B
257 277Right-handed alpha
Helix 17
AB8
B
278 280Right-handed 310
Helix 18
AB9
B
293 305Right-handed alpha
Helix 19
AC1
B
309 313Right-handed 310
Helix 20
AC2
B
319 337Right-handed alpha
Helix 21
AC3
B
345 351Right-handed alpha
Helix 22
AC4
B
353 369Right-handed alpha
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There are 2 sheets in PDB entry 9D5P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 202first strand
Strand 2
A
205 212anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
266 270anti-parallel
Strand 5
A
253 257anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
333 336parallel
Strand 3
A
325 327anti-parallel
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