Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D5S entry

There are 2 chains in PDB entry 9D5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ALA 1202
1
 ASP 2ASN 1200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 9D5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 45Right-handed alpha
Helix 2
AA2
A
50 77Right-handed alpha
Helix 3
AA3
A
85 97Right-handed alpha
Helix 4
AA4
A
98 103Right-handed 310
Helix 5
AA5
A
104 124Right-handed alpha
Helix 6
AA6
A
142 150Right-handed alpha
Helix 7
AA7
A
152 169Right-handed alpha
Helix 8
AA8
A
171 190Right-handed alpha
Helix 9
AA9
A
193 201Right-handed alpha
Helix 10
AB1
A
206 238Right-handed alpha
Helix 11
AB2
A
251 253Right-handed 310
Helix 12
AB3
A
261 263Right-handed 310
Helix 13
AB4
A
264 269Right-handed alpha
Helix 14
AB5
A
279 286Right-handed alpha
Helix 15
AB6
A
291 304Right-handed alpha
Helix 16
AB7
A
310 315Right-handed alpha
Helix 17
AB8
A
352 372Right-handed alpha
Helix 18
AB9
A
386 400Right-handed alpha
Helix 19
AC1
A
401 409Right-handed alpha
Helix 20
AC2
A
417 433Right-handed alpha
Helix 21
AC3
A
434 451Right-handed alpha
Helix 22
AC4
A
458 471Right-handed alpha
Helix 23
AC5
A
484 489Right-handed 310
Helix 24
AC6
A
498 519Right-handed alpha
Helix 25
AC7
A
524 528Right-handed 310
Helix 26
AC8
A
533 547Right-handed alpha
Helix 27
AC9
A
551 560Right-handed alpha
Helix 28
AD1
A
567 574Right-handed alpha
Helix 29
AD2
A
574 589Right-handed alpha
Helix 30
AD3
A
606 610Right-handed 310
Helix 31
AD4
A
616 648Right-handed alpha
Helix 32
AD5
A
650 676Right-handed alpha
Helix 33
AD6
A
686 697Right-handed alpha
Helix 34
AD7
A
698 703Right-handed 310
Helix 35
AD8
A
704 724Right-handed alpha
Helix 36
AD9
A
740 748Right-handed alpha
Helix 37
AE1
A
750 770Right-handed alpha
Helix 38
AE2
A
772 787Right-handed alpha
Helix 39
AE3
A
792 798Right-handed alpha
Helix 40
AE4
A
799 801Right-handed 310
Helix 41
AE5
A
804 836Right-handed alpha
Helix 42
AE6
A
887 902Right-handed alpha
Helix 43
AE7
A
909 915Right-handed alpha
Helix 44
AE8
A
950 970Right-handed alpha
Helix 45
AE9
A
974 978Right-handed 310
Helix 46
AF1
A
982 998Right-handed alpha
Helix 47
AF2
A
999 1005Right-handed alpha
Helix 48
AF3
A
1015 1029Right-handed alpha
Helix 49
AF4
A
1033 1049Right-handed alpha
Helix 50
AF5
A
1053 1055Right-handed 310
Helix 51
AF6
A
1056 1068Right-handed alpha
Helix 52
AF7
A
1082 1087Right-handed 310
Helix 53
AF8
A
1096 1118Right-handed alpha
Helix 54
AF9
A
1122 1126Right-handed 310
Helix 55
AG1
A
1131 1143Right-handed alpha
Helix 56
AG2
A
1144 1148Right-handed 310
Helix 57
AG3
A
1149 1158Right-handed alpha
Helix 58
AG4
A
1165 1172Right-handed alpha
Helix 59
AG5
A
1172 1187Right-handed alpha
Helix 60
AG6
1
13 42Right-handed alpha
Helix 61
AG7
1
49 64Right-handed alpha
Helix 62
AG8
1
65 76Right-handed alpha
Helix 63
AG9
1
76 83Right-handed alpha
Helix 64
AH1
1
85 97Right-handed alpha
Helix 65
AH2
1
104 124Right-handed alpha
Helix 66
AH3
1
141 150Right-handed alpha
Helix 67
AH4
1
152 169Right-handed alpha
Helix 68
AH5
1
171 190Right-handed alpha
Helix 69
AH6
1
193 201Right-handed alpha
Helix 70
AH7
1
206 238Right-handed alpha
Helix 71
AH8
1
261 268Right-handed 310
Helix 72
AH9
1
280 286Right-handed alpha
Helix 73
AI1
1
291 304Right-handed alpha
Helix 74
AI2
1
311 317Right-handed alpha
Helix 75
AI3
1
352 372Right-handed alpha
Helix 76
AI4
1
377 381Right-handed 310
Helix 77
AI5
1
386 401Right-handed alpha
Helix 78
AI6
1
401 408Right-handed alpha
Helix 79
AI7
1
417 433Right-handed alpha
Helix 80
AI8
1
436 451Right-handed alpha
Helix 81
AI9
1
455 457Right-handed 310
Helix 82
AJ1
1
458 470Right-handed alpha
Helix 83
AJ2
1
484 488Right-handed 310
Helix 84
AJ3
1
498 518Right-handed alpha
Helix 85
AJ4
1
533 546Right-handed alpha
Helix 86
AJ5
1
551 560Right-handed alpha
Helix 87
AJ6
1
567 574Right-handed alpha
Helix 88
AJ7
1
574 589Right-handed alpha
Helix 89
AJ8
1
616 648Right-handed alpha
Helix 90
AJ9
1
653 677Right-handed alpha
Helix 91
AK1
1
686 697Right-handed alpha
Helix 92
AK2
1
704 725Right-handed alpha
Helix 93
AK3
1
740 747Right-handed alpha
Helix 94
AK4
1
750 770Right-handed alpha
Helix 95
AK5
1
772 787Right-handed alpha
Helix 96
AK6
1
791 798Right-handed alpha
Helix 97
AK7
1
799 801Right-handed 310
Helix 98
AK8
1
804 836Right-handed alpha
Helix 99
AK9
1
859 866Right-handed 310
Helix 100
AL1
1
876 882Right-handed alpha
Helix 101
AL2
1
883 885Right-handed 310
Helix 102
AL3
1
887 903Right-handed alpha
Helix 103
AL4
1
909 914Right-handed alpha
Helix 104
AL5
1
950 970Right-handed alpha
Helix 105
AL6
1
984 998Right-handed alpha
Helix 106
AL7
1
999 1005Right-handed alpha
Helix 107
AL8
1
1015 1031Right-handed alpha
Helix 108
AL9
1
1032 1049Right-handed alpha
Helix 109
AM1
1
1053 1055Right-handed 310
Helix 110
AM2
1
1056 1068Right-handed alpha
Helix 111
AM3
1
1082 1087Right-handed 310
Helix 112
AM4
1
1089 1093Right-handed 310
Helix 113
AM5
1
1096 1117Right-handed alpha
Helix 114
AM6
1
1131 1143Right-handed alpha
Helix 115
AM7
1
1149 1158Right-handed alpha
Helix 116
AM8
1
1165 1172Right-handed alpha
Helix 117
AM9
1
1172 1187Right-handed alpha
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There are 8 sheets in PDB entry 9D5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
473 474parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 728first strand
Strand 2
A
734 735anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 847first strand
Strand 2
A
1071 1072parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
126 127first strand
Strand 2
1
137 138anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
248 249first strand
Strand 2
1
473 474parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
318 319first strand
Strand 2
1
346 347parallel
Strand 3
1
332 333anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
846 847first strand
Strand 2
1
1071 1072parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
932 934first strand
Strand 2
1
941 943anti-parallel
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