Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D5W entry

There are 9 chains in PDB entry 9D5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	GLN 248
B	ALA 22	GLN 248
C	ALA 22	GLN 248
D	ALA 22	GLN 248
E	ALA 22	GLN 248
F	ALA 22	GLN 248
G	ALA 22	GLN 248
H	ALA 22	GLN 248
I	ALA 22	GLN 248

There are 83 helices in PDB entry 9D5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	60	Right-handed alpha
Helix 2	AA2	A	69	80	Right-handed alpha
Helix 3	AA3	A	92	99	Right-handed alpha
Helix 4	AA4	A	123	127	Right-handed 310
Helix 5	AA5	A	138	147	Right-handed alpha
Helix 6	AA6	A	161	169	Right-handed alpha
Helix 7	AA7	A	178	187	Right-handed alpha
Helix 8	AA8	A	211	231	Right-handed alpha
Helix 9	AA9	A	232	243	Right-handed alpha
Helix 10	AB1	B	46	60	Right-handed alpha
Helix 11	AB2	B	69	71	Right-handed 310
Helix 12	AB3	B	72	79	Right-handed alpha
Helix 13	AB4	B	92	97	Right-handed alpha
Helix 14	AB5	B	124	128	Right-handed 310
Helix 15	AB6	B	138	148	Right-handed alpha
Helix 16	AB7	B	161	168	Right-handed alpha
Helix 17	AB8	B	178	187	Right-handed alpha
Helix 18	AB9	B	211	231	Right-handed alpha
Helix 19	AC1	B	232	243	Right-handed alpha
Helix 20	AC2	C	46	59	Right-handed alpha
Helix 21	AC3	C	69	71	Right-handed 310
Helix 22	AC4	C	72	79	Right-handed alpha
Helix 23	AC5	C	92	99	Right-handed alpha
Helix 24	AC6	C	123	127	Right-handed 310
Helix 25	AC7	C	138	148	Right-handed alpha
Helix 26	AC8	C	161	168	Right-handed alpha
Helix 27	AC9	C	178	187	Right-handed alpha
Helix 28	AD1	C	211	231	Right-handed alpha
Helix 29	AD2	C	232	243	Right-handed alpha
Helix 30	AD3	D	46	59	Right-handed alpha
Helix 31	AD4	D	69	71	Right-handed 310
Helix 32	AD5	D	72	79	Right-handed alpha
Helix 33	AD6	D	92	97	Right-handed alpha
Helix 34	AD7	D	123	128	Right-handed 310
Helix 35	AD8	D	138	148	Right-handed alpha
Helix 36	AD9	D	163	168	Right-handed alpha
Helix 37	AE1	D	178	187	Right-handed alpha
Helix 38	AE2	D	211	231	Right-handed alpha
Helix 39	AE3	D	232	243	Right-handed alpha
Helix 40	AE4	E	46	59	Right-handed alpha
Helix 41	AE5	E	69	79	Right-handed alpha
Helix 42	AE6	E	92	97	Right-handed alpha
Helix 43	AE7	E	123	127	Right-handed 310
Helix 44	AE8	E	138	148	Right-handed alpha
Helix 45	AE9	E	161	168	Right-handed alpha
Helix 46	AF1	E	178	187	Right-handed alpha
Helix 47	AF2	E	211	231	Right-handed alpha
Helix 48	AF3	E	232	243	Right-handed alpha
Helix 49	AF4	F	46	60	Right-handed alpha
Helix 50	AF5	F	69	79	Right-handed alpha
Helix 51	AF6	F	92	97	Right-handed alpha
Helix 52	AF7	F	138	148	Right-handed alpha
Helix 53	AF8	F	161	169	Right-handed alpha
Helix 54	AF9	F	178	187	Right-handed alpha
Helix 55	AG1	F	211	231	Right-handed alpha
Helix 56	AG2	F	232	243	Right-handed alpha
Helix 57	AG3	G	46	60	Right-handed alpha
Helix 58	AG4	G	69	71	Right-handed 310
Helix 59	AG5	G	72	79	Right-handed alpha
Helix 60	AG6	G	92	99	Right-handed alpha
Helix 61	AG7	G	123	127	Right-handed 310
Helix 62	AG8	G	138	148	Right-handed alpha
Helix 63	AG9	G	161	169	Right-handed alpha
Helix 64	AH1	G	178	189	Right-handed alpha
Helix 65	AH2	G	211	231	Right-handed alpha
Helix 66	AH3	G	232	243	Right-handed alpha
Helix 67	AH4	H	46	60	Right-handed alpha
Helix 68	AH5	H	69	80	Right-handed alpha
Helix 69	AH6	H	94	99	Right-handed alpha
Helix 70	AH7	H	138	148	Right-handed alpha
Helix 71	AH8	H	161	169	Right-handed alpha
Helix 72	AH9	H	178	189	Right-handed alpha
Helix 73	AI1	H	211	231	Right-handed alpha
Helix 74	AI2	H	232	243	Right-handed alpha
Helix 75	AI3	I	46	59	Right-handed alpha
Helix 76	AI4	I	69	79	Right-handed alpha
Helix 77	AI5	I	92	99	Right-handed alpha
Helix 78	AI6	I	123	127	Right-handed 310
Helix 79	AI7	I	138	147	Right-handed alpha
Helix 80	AI8	I	161	168	Right-handed alpha
Helix 81	AI9	I	178	188	Right-handed alpha
Helix 82	AJ1	I	211	231	Right-handed alpha
Helix 83	AJ2	I	232	243	Right-handed alpha

There are 42 sheets in PDB entry 9D5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	23	29	parallel
Strand 3	A	84	85	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	37	40	anti-parallel
Strand 3	A	43	45	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	207	208	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	158	first strand
Strand 2	A	131	135	parallel
Strand 3	A	173	177	parallel
Strand 4	A	106	115	anti-parallel
Strand 5	A	192	195	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	158	first strand
Strand 2	A	131	135	parallel
Strand 3	A	173	177	parallel
Strand 4	A	106	115	anti-parallel
Strand 5	A	201	204	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	23	29	parallel
Strand 3	B	84	85	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	43	45	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	201	205	anti-parallel
Strand 3	B	106	115	anti-parallel
Strand 4	B	173	177	anti-parallel
Strand 5	B	131	135	parallel
Strand 6	B	154	158	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	201	205	anti-parallel
Strand 3	B	106	115	anti-parallel
Strand 4	B	192	194	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	207	208	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	67	first strand
Strand 2	C	23	29	parallel
Strand 3	C	84	85	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	37	39	anti-parallel
Strand 3	C	44	45	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	207	208	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	131	135	parallel
Strand 3	C	173	177	parallel
Strand 4	C	106	115	anti-parallel
Strand 5	C	192	194	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	131	135	parallel
Strand 3	C	173	177	parallel
Strand 4	C	106	115	anti-parallel
Strand 5	C	201	204	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	67	first strand
Strand 2	D	24	29	parallel
Strand 3	D	84	85	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	37	40	anti-parallel
Strand 3	D	43	45	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	106	115	anti-parallel
Strand 4	D	173	177	anti-parallel
Strand 5	D	131	135	parallel
Strand 6	D	154	158	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	106	115	anti-parallel
Strand 4	D	192	194	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	207	208	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	67	first strand
Strand 2	E	23	29	parallel
Strand 3	E	84	85	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	37	39	anti-parallel
Strand 3	E	44	45	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	90	first strand
Strand 2	E	192	205	anti-parallel
Strand 3	E	106	115	anti-parallel
Strand 4	E	173	177	anti-parallel
Strand 5	E	131	135	parallel
Strand 6	E	154	158	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	207	209	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	67	first strand
Strand 2	F	23	29	parallel
Strand 3	F	84	85	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	37	39	anti-parallel
Strand 3	F	44	45	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	201	205	anti-parallel
Strand 3	F	106	115	anti-parallel
Strand 4	F	173	177	anti-parallel
Strand 5	F	131	135	parallel
Strand 6	F	154	158	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	201	205	anti-parallel
Strand 3	F	106	115	anti-parallel
Strand 4	F	192	194	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	207	208	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	67	first strand
Strand 2	G	23	29	parallel
Strand 3	G	84	85	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	33	first strand
Strand 2	G	37	40	anti-parallel
Strand 3	G	43	45	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	101	first strand
Strand 2	G	207	208	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	158	first strand
Strand 2	G	131	135	parallel
Strand 3	G	173	177	parallel
Strand 4	G	106	115	anti-parallel
Strand 5	G	192	204	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	67	first strand
Strand 2	H	23	29	parallel
Strand 3	H	84	85	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	40	first strand
Strand 2	H	43	45	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	101	first strand
Strand 2	H	207	208	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	158	first strand
Strand 2	H	131	135	parallel
Strand 3	H	173	177	parallel
Strand 4	H	106	115	anti-parallel
Strand 5	H	192	204	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	67	first strand
Strand 2	I	23	29	parallel
Strand 3	I	84	85	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	33	first strand
Strand 2	I	37	40	anti-parallel
Strand 3	I	43	45	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	101	first strand
Strand 2	I	207	208	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	131	135	parallel
Strand 3	I	173	177	parallel
Strand 4	I	106	115	anti-parallel
Strand 5	I	192	194	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	131	135	parallel
Strand 3	I	173	177	parallel
Strand 4	I	106	115	anti-parallel
Strand 5	I	200	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5W