Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D5X entry

There are 2 chains in PDB entry 9D5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 411
B
 SER 2ASN 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9D5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
10 27Right-handed alpha
Helix 3
AA3
A
30 42Right-handed alpha
Helix 4
AA4
A
43 57Right-handed alpha
Helix 5
AA5
A
60 64Right-handed 310
Helix 6
AA6
A
84 100Right-handed alpha
Helix 7
AA7
A
102 110Right-handed alpha
Helix 8
AA8
A
122 136Right-handed alpha
Helix 9
AA9
A
148 153Right-handed alpha
Helix 10
AB1
A
154 167Right-handed alpha
Helix 11
AB2
A
168 182Right-handed alpha
Helix 12
AB3
A
183 186Right-handed 310
Helix 13
AB4
A
187 196Right-handed alpha
Helix 14
AB5
A
200 209Right-handed alpha
Helix 15
AB6
A
211 220Right-handed alpha
Helix 16
AB7
A
220 228Right-handed alpha
Helix 17
AB8
A
247 265Right-handed alpha
Helix 18
AB9
A
303 331Right-handed alpha
Helix 19
AC1
A
339 357Right-handed alpha
Helix 20
AC2
A
363 390Right-handed alpha
Helix 21
AC3
A
393 402Right-handed alpha
Helix 22
AC4
A
405 411Right-handed alpha
Helix 23
AC5
B
3 10Right-handed alpha
Helix 24
AC6
B
10 27Right-handed alpha
Helix 25
AC7
B
30 43Right-handed alpha
Helix 26
AC8
B
43 57Right-handed alpha
Helix 27
AC9
B
60 64Right-handed 310
Helix 28
AD1
B
84 102Right-handed alpha
Helix 29
AD2
B
102 109Right-handed alpha
Helix 30
AD3
B
123 136Right-handed alpha
Helix 31
AD4
B
148 153Right-handed alpha
Helix 32
AD5
B
154 167Right-handed alpha
Helix 33
AD6
B
168 182Right-handed alpha
Helix 34
AD7
B
183 186Right-handed 310
Helix 35
AD8
B
187 196Right-handed alpha
Helix 36
AD9
B
201 209Right-handed alpha
Helix 37
AE1
B
211 220Right-handed alpha
Helix 38
AE2
B
220 228Right-handed alpha
Helix 39
AE3
B
247 264Right-handed alpha
Helix 40
AE4
B
303 331Right-handed alpha
Helix 41
AE5
B
335 338Right-handed 310
Helix 42
AE6
B
339 357Right-handed alpha
Helix 43
AE7
B
363 390Right-handed alpha
Helix 44
AE8
B
393 402Right-handed alpha
Helix 45
AE9
B
405 411Right-handed alpha
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There are 4 sheets in PDB entry 9D5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
233 237parallel
Strand 3
A
240 245anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
280 283anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
293 295anti-parallel
Strand 3
A
300 302anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
233 237parallel
Strand 3
B
240 245anti-parallel
Strand 4
B
140 145anti-parallel
Strand 5
B
280 283anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 290first strand
Strand 2
B
293 295anti-parallel
Strand 3
B
300 302anti-parallel
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