Analysis of interatomic Contacts of Structural Units in PDB entry:
9D61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D61 entry

There are 4 chains in PDB entry 9D61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 57ARG 342
C
 SER 2ASN 340
D
 SER 8ARG 62
B
 LEU 5PHE 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9D61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 87Right-handed alpha
Helix 2
AA2
A
92 110Right-handed alpha
Helix 3
AA3
A
111 122Right-handed alpha
Helix 4
AA4
A
126 161Right-handed alpha
Helix 5
AA5
A
162 170Right-handed alpha
Helix 6
AA6
A
171 196Right-handed alpha
Helix 7
AA7
A
219 236Right-handed alpha
Helix 8
AA8
A
236 256Right-handed alpha
Helix 9
AA9
A
264 300Right-handed alpha
Helix 10
AB1
A
305 333Right-handed alpha
Helix 11
AB2
A
335 342Right-handed alpha
Helix 12
AB3
C
3 25Right-handed alpha
Helix 13
AB4
C
30 35Right-handed alpha
Helix 14
AB5
D
9 24Right-handed alpha
Helix 15
AB6
D
29 44Right-handed alpha
Helix 16
AB7
B
6 28Right-handed alpha
Helix 17
AB8
B
28 33Right-handed alpha
Helix 18
AB9
B
45 50Right-handed alpha
Helix 19
AC1
B
207 215Right-handed 310
Helix 20
AC2
B
241 255Right-handed alpha
Helix 21
AC3
B
256 260Right-handed 310
Helix 22
AC4
B
270 281Right-handed alpha
Helix 23
AC5
B
295 309Right-handed alpha
Helix 24
AC6
B
330 351Right-handed alpha
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There are 10 sheets in PDB entry 9D61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
208 212anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
89 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 105first strand
Strand 2
C
111 115anti-parallel
Strand 3
C
120 125anti-parallel
Strand 4
C
134 140anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 160first strand
Strand 2
C
165 170anti-parallel
Strand 3
C
176 181anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
198 202anti-parallel
Strand 3
C
208 212anti-parallel
Strand 4
C
218 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
262 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
276 278first strand
Strand 2
C
284 288anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 307anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
220 226parallel
Strand 3
B
263 269parallel
Strand 4
B
320 323parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 189first strand
Strand 2
B
196 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il