Analysis of interatomic Contacts of Structural Units in PDB entry:
9D6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D6F entry

There are 5 chains in PDB entry 9D6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ILE 2ILE 111
H
 GLN 1SER 121
A
 GLN 1VAL 115
C
 ILE 2MET 106
D
 PHE 1SER 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 9D6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
84 88Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
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There are 17 sheets in PDB entry 9D6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
24 25anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
58 59first strand
Strand 2
L
50 55anti-parallel
Strand 3
L
38 43anti-parallel
Strand 4
L
94 95anti-parallel
Strand 5
L
102 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
58 59first strand
Strand 2
L
50 55anti-parallel
Strand 3
L
38 43anti-parallel
Strand 4
L
90 91anti-parallel
Strand 5
L
107 108anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
68 71first strand
Strand 2
L
76 79anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
118 120parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 23first strand
Strand 2
H
78 81anti-parallel
Strand 3
H
70 72anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
43 51anti-parallel
Strand 3
H
34 40anti-parallel
Strand 4
H
93 94anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
43 51anti-parallel
Strand 3
H
34 40anti-parallel
Strand 4
H
97 98anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
22 24anti-parallel
Strand 3
A
78 79anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
82 84anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 51first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
93 98anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
63 65anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
33 38anti-parallel
Strand 3
C
85 90anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 5first strand
Strand 2
D
42 44anti-parallel
Strand 3
D
101 102anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 22first strand
Strand 2
D
142 150parallel
Strand 3
D
125 135anti-parallel
Strand 4
D
54 58anti-parallel
Strand 5
D
93 95anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 37first strand
Strand 2
D
106 107anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 76first strand
Strand 2
D
81 82anti-parallel
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