Analysis of interatomic Contacts of Structural Units in PDB entry:
9D7C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D7C entry

There are 4 chains in PDB entry 9D7C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38LEU 280
B
 SER 38LEU 280
C
 SER 38LEU 280
D
 ASN 37TYR 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9D7C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 49Right-handed alpha
Helix 2
AA2
A
71 77Right-handed 310
Helix 3
AA3
A
81 84Right-handed 310
Helix 4
AA4
A
85 96Right-handed alpha
Helix 5
AA5
A
122 130Right-handed alpha
Helix 6
AA6
A
131 143Right-handed alpha
Helix 7
AA7
A
143 155Right-handed alpha
Helix 8
AA8
A
167 172Right-handed alpha
Helix 9
AA9
A
177 191Right-handed alpha
Helix 10
AB1
A
196 207Right-handed alpha
Helix 11
AB2
A
261 274Right-handed alpha
Helix 12
AB3
B
39 48Right-handed alpha
Helix 13
AB4
B
49 51Right-handed 310
Helix 14
AB5
B
71 77Right-handed 310
Helix 15
AB6
B
81 84Right-handed 310
Helix 16
AB7
B
85 96Right-handed alpha
Helix 17
AB8
B
114 118Right-handed 310
Helix 18
AB9
B
122 130Right-handed alpha
Helix 19
AC1
B
131 143Right-handed alpha
Helix 20
AC2
B
143 155Right-handed alpha
Helix 21
AC3
B
167 172Right-handed alpha
Helix 22
AC4
B
177 191Right-handed alpha
Helix 23
AC5
B
196 207Right-handed alpha
Helix 24
AC6
B
261 274Right-handed alpha
Helix 25
AC7
C
39 49Right-handed alpha
Helix 26
AC8
C
71 77Right-handed 310
Helix 27
AC9
C
81 84Right-handed 310
Helix 28
AD1
C
85 96Right-handed alpha
Helix 29
AD2
C
114 118Right-handed 310
Helix 30
AD3
C
122 130Right-handed alpha
Helix 31
AD4
C
131 155Right-handed alpha
Helix 32
AD5
C
167 172Right-handed alpha
Helix 33
AD6
C
177 191Right-handed alpha
Helix 34
AD7
C
196 207Right-handed alpha
Helix 35
AD8
C
261 274Right-handed alpha
Helix 36
AD9
D
38 48Right-handed alpha
Helix 37
AE1
D
71 77Right-handed 310
Helix 38
AE2
D
81 84Right-handed 310
Helix 39
AE3
D
85 96Right-handed alpha
Helix 40
AE4
D
114 118Right-handed 310
Helix 41
AE5
D
122 130Right-handed alpha
Helix 42
AE6
D
131 155Right-handed alpha
Helix 43
AE7
D
167 172Right-handed alpha
Helix 44
AE8
D
177 190Right-handed alpha
Helix 45
AE9
D
196 207Right-handed alpha
Helix 46
AF1
D
261 274Right-handed alpha
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There are 4 sheets in PDB entry 9D7C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
55 60anti-parallel
Strand 3
A
246 254anti-parallel
Strand 4
A
230 239anti-parallel
Strand 5
A
215 224anti-parallel
Strand 6
A
208 212anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 69first strand
Strand 2
B
55 60anti-parallel
Strand 3
B
246 254anti-parallel
Strand 4
B
230 239anti-parallel
Strand 5
B
215 224anti-parallel
Strand 6
B
208 212anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 69first strand
Strand 2
C
55 60anti-parallel
Strand 3
C
246 254anti-parallel
Strand 4
C
230 239anti-parallel
Strand 5
C
215 224anti-parallel
Strand 6
C
208 212anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 69first strand
Strand 2
D
55 60anti-parallel
Strand 3
D
246 254anti-parallel
Strand 4
D
230 239anti-parallel
Strand 5
D
215 224anti-parallel
Strand 6
D
208 212anti-parallel
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