Analysis of interatomic Contacts of Structural Units in PDB entry:
9D7K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D7K entry

There is 1 chain in PDB entry 9D7K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	GLY 48	GLN 422

There are 12 helices in PDB entry 9D7K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	S	48	68	Right-handed alpha
Helix 2	AA2	S	76	89	Right-handed alpha
Helix 3	AA3	S	92	102	Right-handed alpha
Helix 4	AA4	S	103	105	Right-handed 310
Helix 5	AA5	S	111	128	Right-handed alpha
Helix 6	AA6	S	150	160	Right-handed alpha
Helix 7	AA7	S	172	188	Right-handed alpha
Helix 8	AA8	S	222	226	Right-handed 310
Helix 9	AA9	S	283	290	Right-handed alpha
Helix 10	AB1	S	292	302	Right-handed alpha
Helix 11	AB2	S	324	332	Right-handed alpha
Helix 12	AB3	S	334	338	Right-handed 310

There are 4 sheets in PDB entry 9D7K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	73	75	first strand
Strand 2	S	413	417	anti-parallel
Strand 3	S	399	405	anti-parallel
Strand 4	S	272	279	anti-parallel
Strand 5	S	261	267	anti-parallel
Strand 6	S	251	256	anti-parallel
Strand 7	S	304	306	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	137	first strand
Strand 2	S	206	214	anti-parallel
Strand 3	S	140	144	anti-parallel
Strand 4	S	167	168	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	137	first strand
Strand 2	S	206	214	anti-parallel
Strand 3	S	356	362	parallel
Strand 4	S	319	323	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	227	232	first strand
Strand 2	S	238	247	anti-parallel
Strand 3	S	308	314	anti-parallel
Strand 4	S	391	394	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D7K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D7K