Analysis of interatomic Contacts of Structural Units in PDB entry:
9D7Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D7Q entry

There are 2 chains in PDB entry 9D7Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 130GLU 407
B
 GLU 132GLU 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9D7Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
185 201Right-handed alpha
Helix 2
AA2
A
234 243Right-handed alpha
Helix 3
AA3
A
246 266Right-handed alpha
Helix 4
AA4
A
296 301Right-handed alpha
Helix 5
AA5
A
317 321Right-handed 310
Helix 6
AA6
A
326 344Right-handed alpha
Helix 7
AA7
A
353 363Right-handed alpha
Helix 8
AA8
A
367 372Right-handed alpha
Helix 9
AA9
A
375 387Right-handed alpha
Helix 10
AB1
A
389 393Right-handed 310
Helix 11
AB2
A
395 401Right-handed alpha
Helix 12
AB3
B
185 200Right-handed alpha
Helix 13
AB4
B
234 243Right-handed alpha
Helix 14
AB5
B
246 266Right-handed alpha
Helix 15
AB6
B
277 279Right-handed 310
Helix 16
AB7
B
296 301Right-handed alpha
Helix 17
AB8
B
317 322Right-handed 310
Helix 18
AB9
B
327 344Right-handed alpha
Helix 19
AC1
B
353 364Right-handed alpha
Helix 20
AC2
B
367 372Right-handed alpha
Helix 21
AC3
B
375 387Right-handed alpha
Helix 22
AC4
B
395 402Right-handed alpha
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There are 4 sheets in PDB entry 9D7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
160 166anti-parallel
Strand 4
A
172 177anti-parallel
Strand 5
A
220 228anti-parallel
Strand 6
A
209 217anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
290 292anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
146 154anti-parallel
Strand 3
B
160 166anti-parallel
Strand 4
B
171 177anti-parallel
Strand 5
B
220 228anti-parallel
Strand 6
B
209 217anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
290 292anti-parallel
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