Analysis of interatomic Contacts of Structural Units in PDB entry:
9D7U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D7U entry

There is 1 chain in PDB entry 9D7U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2SER 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9D7U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 63Right-handed alpha
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
237 265Right-handed alpha
Helix 4
AA4
A
266 268Right-handed 310
Helix 5
AA5
A
275 300Right-handed alpha
Helix 6
AA6
A
300 305Right-handed alpha
Helix 7
AA7
A
305 311Right-handed alpha
Helix 8
AA8
A
314 324Right-handed alpha
Helix 9
AA9
A
335 338Right-handed 310
Helix 10
AB1
A
339 344Right-handed alpha
Helix 11
AB2
A
344 366Right-handed alpha
Helix 12
AB3
A
369 387Right-handed alpha
Helix 13
AB4
A
391 396Right-handed alpha
Helix 14
AB5
A
402 405Right-handed 310
Helix 15
AB6
A
406 416Right-handed alpha
Helix 16
AB7
A
417 422Right-handed 310
Helix 17
AB8
A
434 440Right-handed alpha
Helix 18
AB9
A
441 462Right-handed alpha
Helix 19
AC1
A
464 469Right-handed alpha
Helix 20
AC2
A
476 505Right-handed alpha
Helix 21
AC3
A
508 526Right-handed alpha
Helix 22
AC4
A
530 534Right-handed 310
Helix 23
AC5
A
538 558Right-handed alpha
Helix 24
AC6
A
559 571Right-handed alpha
Helix 25
AC7
A
576 593Right-handed alpha
Helix 26
AC8
A
593 628Right-handed alpha
Helix 27
AC9
A
629 634Right-handed alpha
Helix 28
AD1
A
700 703Right-handed 310
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There are 4 sheets in PDB entry 9D7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 23first strand
Strand 2
A
26 36anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
218 228anti-parallel
Strand 5
A
200 205anti-parallel
Strand 6
A
150 156anti-parallel
Strand 7
A
161 171anti-parallel
Strand 8
A
177 188anti-parallel
Strand 9
A
93 101anti-parallel
Strand 10
A
106 116anti-parallel
Strand 11
A
119 129anti-parallel
Strand 12
A
13 23parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
641 645first strand
Strand 2
A
657 663anti-parallel
Strand 3
A
716 721anti-parallel
Strand 4
A
706 711anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
747 751parallel
Strand 3
A
730 737anti-parallel
Strand 4
A
672 677anti-parallel
Strand 5
A
684 689anti-parallel
Strand 6
A
696 698anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
747 751parallel
Strand 3
A
730 737anti-parallel
Strand 4
A
741 743anti-parallel
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