Analysis of interatomic Contacts of Structural Units in PDB entry:
9D7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D7W entry

There is 1 chain in PDB entry 9D7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2SER 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9D7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed 310
Helix 2
AA2
A
57 66Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
237 262Right-handed alpha
Helix 5
AA5
A
281 300Right-handed alpha
Helix 6
AA6
A
305 324Right-handed alpha
Helix 7
AA7
A
325 329Right-handed 310
Helix 8
AA8
A
333 366Right-handed alpha
Helix 9
AA9
A
369 386Right-handed alpha
Helix 10
AB1
A
387 399Right-handed alpha
Helix 11
AB2
A
402 423Right-handed alpha
Helix 12
AB3
A
434 440Right-handed alpha
Helix 13
AB4
A
441 472Right-handed alpha
Helix 14
AB5
A
476 505Right-handed alpha
Helix 15
AB6
A
507 528Right-handed alpha
Helix 16
AB7
A
538 558Right-handed alpha
Helix 17
AB8
A
559 572Right-handed alpha
Helix 18
AB9
A
577 609Right-handed alpha
Helix 19
AC1
A
610 636Right-handed alpha
Helix 20
AC2
A
666 670Right-handed 310
Helix 21
AC3
A
725 729Right-handed 310
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There are 4 sheets in PDB entry 9D7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 23first strand
Strand 2
A
26 37anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
218 228anti-parallel
Strand 5
A
200 209anti-parallel
Strand 6
A
149 156anti-parallel
Strand 7
A
161 171anti-parallel
Strand 8
A
177 188anti-parallel
Strand 9
A
92 101anti-parallel
Strand 10
A
106 116anti-parallel
Strand 11
A
119 129anti-parallel
Strand 12
A
12 23parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 645first strand
Strand 2
A
655 662anti-parallel
Strand 3
A
716 722anti-parallel
Strand 4
A
707 711anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
747 751parallel
Strand 3
A
730 737anti-parallel
Strand 4
A
672 677anti-parallel
Strand 5
A
683 689anti-parallel
Strand 6
A
696 698anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
747 751parallel
Strand 3
A
730 737anti-parallel
Strand 4
A
741 742anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il