Analysis of interatomic Contacts of Structural Units in PDB entry:
9D7X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D7X entry

There is 1 chain in PDB entry 9D7X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2SER 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9D7X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed 310
Helix 2
AA2
A
58 66Right-handed alpha
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
76 83Right-handed 310
Helix 5
AA5
A
237 261Right-handed alpha
Helix 6
AA6
A
280 300Right-handed alpha
Helix 7
AA7
A
300 305Right-handed alpha
Helix 8
AA8
A
305 324Right-handed alpha
Helix 9
AA9
A
325 327Right-handed 310
Helix 10
AB1
A
333 366Right-handed alpha
Helix 11
AB2
A
370 387Right-handed alpha
Helix 12
AB3
A
388 399Right-handed alpha
Helix 13
AB4
A
402 423Right-handed alpha
Helix 14
AB5
A
434 440Right-handed alpha
Helix 15
AB6
A
441 474Right-handed alpha
Helix 16
AB7
A
476 505Right-handed alpha
Helix 17
AB8
A
508 527Right-handed alpha
Helix 18
AB9
A
538 558Right-handed alpha
Helix 19
AC1
A
559 571Right-handed alpha
Helix 20
AC2
A
576 634Right-handed alpha
Helix 21
AC3
A
666 670Right-handed 310
Helix 22
AC4
A
725 729Right-handed 310
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There are 4 sheets in PDB entry 9D7X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 23first strand
Strand 2
A
26 37anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
218 228anti-parallel
Strand 5
A
200 209anti-parallel
Strand 6
A
149 156anti-parallel
Strand 7
A
161 171anti-parallel
Strand 8
A
177 188anti-parallel
Strand 9
A
93 101anti-parallel
Strand 10
A
106 116anti-parallel
Strand 11
A
119 129anti-parallel
Strand 12
A
12 23parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 645first strand
Strand 2
A
655 662anti-parallel
Strand 3
A
716 722anti-parallel
Strand 4
A
706 711anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
747 751parallel
Strand 3
A
730 737anti-parallel
Strand 4
A
672 677anti-parallel
Strand 5
A
683 689anti-parallel
Strand 6
A
696 698anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
747 751parallel
Strand 3
A
730 737anti-parallel
Strand 4
A
741 743anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il