Analysis of interatomic Contacts of Structural Units in PDB entry:
9D80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D80 entry

There are 6 chains in PDB entry 9D80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 17MET 675
B
 MET 1VAL 234
C
 GLY 4ASN 278
D
 VAL 30GLY 87
E
 ARG 24GLY 87
F
 ASN 36ALA 83
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9D80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 58Right-handed alpha
Helix 2
AA2
A
59 63Right-handed 310
Helix 3
AA3
A
76 87Right-handed alpha
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
106 108Right-handed 310
Helix 6
AA6
A
109 127Right-handed alpha
Helix 7
AA7
A
129 145Right-handed alpha
Helix 8
AA8
A
174 191Right-handed alpha
Helix 9
AA9
A
191 197Right-handed alpha
Helix 10
AB1
A
200 213Right-handed alpha
Helix 11
AB2
A
256 260Right-handed 310
Helix 12
AB3
A
271 277Right-handed alpha
Helix 13
AB4
A
385 403Right-handed alpha
Helix 14
AB5
A
423 427Right-handed 310
Helix 15
AB6
A
433 437Right-handed 310
Helix 16
AB7
A
452 470Right-handed alpha
Helix 17
AB8
A
488 494Right-handed alpha
Helix 18
AB9
A
498 528Right-handed alpha
Helix 19
AC1
A
529 538Right-handed alpha
Helix 20
AC2
A
546 551Right-handed 310
Helix 21
AC3
A
561 579Right-handed alpha
Helix 22
AC4
A
584 599Right-handed alpha
Helix 23
AC5
A
601 610Right-handed alpha
Helix 24
AC6
A
616 667Right-handed alpha
Helix 25
AC7
A
668 675Right-handed alpha
Helix 26
AC8
B
3 15Right-handed alpha
Helix 27
AC9
B
33 52Right-handed alpha
Helix 28
AD1
B
169 171Right-handed 310
Helix 29
AD2
B
172 186Right-handed alpha
Helix 30
AD3
B
190 211Right-handed alpha
Helix 31
AD4
B
226 231Right-handed alpha
Helix 32
AD5
C
5 17Right-handed alpha
Helix 33
AD6
C
38 42Right-handed 310
Helix 34
AD7
C
65 83Right-handed alpha
Helix 35
AD8
C
88 98Right-handed alpha
Helix 36
AD9
C
99 112Right-handed alpha
Helix 37
AE1
C
115 120Right-handed alpha
Helix 38
AE2
C
122 139Right-handed alpha
Helix 39
AE3
C
140 175Right-handed alpha
Helix 40
AE4
C
179 200Right-handed alpha
Helix 41
AE5
C
210 251Right-handed alpha
Helix 42
AE6
C
256 259Right-handed 310
Helix 43
AE7
C
260 274Right-handed alpha
Helix 44
AE8
D
35 47Right-handed alpha
Helix 45
AE9
D
47 61Right-handed alpha
Helix 46
AF1
D
69 75Right-handed alpha
Helix 47
AF2
E
26 35Right-handed alpha
Helix 48
AF3
E
37 46Right-handed alpha
Helix 49
AF4
E
47 59Right-handed alpha
Helix 50
AF5
E
70 75Right-handed alpha
Helix 51
AF6
F
37 47Right-handed alpha
Helix 52
AF7
F
47 61Right-handed alpha
Helix 53
AF8
F
69 75Right-handed alpha
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There are 9 sheets in PDB entry 9D80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 241first strand
Strand 2
A
149 159anti-parallel
Strand 3
A
362 363anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 171first strand
Strand 2
A
217 227anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
262 270anti-parallel
Strand 3
A
317 328anti-parallel
Strand 4
A
335 343anti-parallel
Strand 5
A
346 352anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
444 445anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
103 109anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
127 128parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 67first strand
Strand 2
D
82 85parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 68first strand
Strand 2
E
82 86parallel
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