Analysis of interatomic Contacts of Structural Units in PDB entry:
9D81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D81 entry

There is 1 chain in PDB entry 9D81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 462PHE 1086
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9D81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
462 469Right-handed alpha
Helix 2
AA2
A
470 476Right-handed 310
Helix 3
AA3
A
483 491Right-handed alpha
Helix 4
AA4
A
492 513Right-handed alpha
Helix 5
AA5
A
524 529Right-handed alpha
Helix 6
AA6
A
552 566Right-handed alpha
Helix 7
AA7
A
580 586Right-handed alpha
Helix 8
AA8
A
604 609Right-handed alpha
Helix 9
AA9
A
610 614Right-handed 310
Helix 10
AB1
A
615 633Right-handed alpha
Helix 11
AB2
A
652 668Right-handed alpha
Helix 12
AB3
A
683 688Right-handed alpha
Helix 13
AB4
A
695 712Right-handed alpha
Helix 14
AB5
A
808 814Right-handed 310
Helix 15
AB6
A
881 885Right-handed 310
Helix 16
AB7
A
930 934Right-handed 310
Helix 17
AB8
A
938 943Right-handed 310
Helix 18
AB9
A
947 951Right-handed 310
Helix 19
AC1
A
991 995Right-handed 310
Helix 20
AC2
A
1044 1048Right-handed 310
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There are 9 sheets in PDB entry 9D81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 573first strand
Strand 2
A
516 521parallel
Strand 3
A
598 601parallel
Strand 4
A
636 641parallel
Strand 5
A
672 674parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
548 549anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 728first strand
Strand 2
A
870 880anti-parallel
Strand 3
A
763 764anti-parallel
Strand 4
A
746 747anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 728first strand
Strand 2
A
870 880anti-parallel
Strand 3
A
782 790anti-parallel
Strand 4
A
843 849anti-parallel
Strand 5
A
1083 1084parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 741first strand
Strand 2
A
771 778anti-parallel
Strand 3
A
852 859anti-parallel
Strand 4
A
794 796anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 906first strand
Strand 2
A
1066 1074anti-parallel
Strand 3
A
954 960anti-parallel
Strand 4
A
965 972anti-parallel
Strand 5
A
979 987anti-parallel
Strand 6
A
997 1005anti-parallel
Strand 7
A
1050 1056anti-parallel
Strand 8
A
924 928anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 906first strand
Strand 2
A
1066 1074anti-parallel
Strand 3
A
954 960anti-parallel
Strand 4
A
965 972anti-parallel
Strand 5
A
979 987anti-parallel
Strand 6
A
997 1005anti-parallel
Strand 7
A
1032 1034anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 921first strand
Strand 2
A
1063 1064anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1008 1011first strand
Strand 2
A
1025 1027anti-parallel
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