Analysis of interatomic Contacts of Structural Units in PDB entry:
9D82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D82 entry

There are 18 chains in PDB entry 9D82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 17ALA 388
B
LYS 2ALA 388
C
LYS 2ALA 388
D
LYS 2ALA 387
E
ARG 18ALA 388
F
LYS 2MET 389
G
ARG 18ALA 387
H
THR 8ALA 388
I
SER 11ALA 388
J
ALA 2VAL 48
K
TYR 3VAL 48
L
TYR 3VAL 48
M
ASP 5VAL 48
N
TYR 3VAL 48
O
ASP 5VAL 48
P
TYR 3VAL 48
Q
TYR 3VAL 48
R
TYR 3VAL 48
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 9D82. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
93 98Right-handed alpha
Helix 2
AA2
A
132 138Right-handed alpha
Helix 3
AA3
A
143 170Right-handed alpha
Helix 4
AA4
A
197 212Right-handed alpha
Helix 5
AA5
A
243 249Right-handed alpha
Helix 6
AA6
A
263 265Right-handed 310
Helix 7
AA7
A
376 378Right-handed 310
Helix 8
AA8
B
92 98Right-handed alpha
Helix 9
AA9
B
133 138Right-handed alpha
Helix 10
AB1
B
143 171Right-handed alpha
Helix 11
AB2
B
197 208Right-handed alpha
Helix 12
AB3
B
243 249Right-handed alpha
Helix 13
AB4
B
262 267Right-handed alpha
Helix 14
AB5
B
376 378Right-handed 310
Helix 15
AB6
C
93 98Right-handed alpha
Helix 16
AB7
C
132 138Right-handed alpha
Helix 17
AB8
C
145 171Right-handed alpha
Helix 18
AB9
C
197 209Right-handed alpha
Helix 19
AC1
C
243 249Right-handed alpha
Helix 20
AC2
C
263 265Right-handed 310
Helix 21
AC3
C
348 352Right-handed 310
Helix 22
AC4
C
376 379Right-handed 310
Helix 23
AC5
D
93 98Right-handed alpha
Helix 24
AC6
D
132 138Right-handed alpha
Helix 25
AC7
D
143 171Right-handed alpha
Helix 26
AC8
D
197 211Right-handed alpha
Helix 27
AC9
D
243 249Right-handed alpha
Helix 28
AD1
D
263 265Right-handed 310
Helix 29
AD2
D
376 379Right-handed 310
Helix 30
AD3
E
35 39Right-handed 310
Helix 31
AD4
E
132 138Right-handed alpha
Helix 32
AD5
E
143 171Right-handed alpha
Helix 33
AD6
E
197 210Right-handed alpha
Helix 34
AD7
E
243 249Right-handed alpha
Helix 35
AD8
E
263 266Right-handed 310
Helix 36
AD9
E
376 379Right-handed 310
Helix 37
AE1
F
36 40Right-handed 310
Helix 38
AE2
F
93 98Right-handed alpha
Helix 39
AE3
F
132 138Right-handed alpha
Helix 40
AE4
F
143 170Right-handed alpha
Helix 41
AE5
F
197 212Right-handed alpha
Helix 42
AE6
F
243 249Right-handed alpha
Helix 43
AE7
F
261 265Right-handed 310
Helix 44
AE8
F
348 352Right-handed 310
Helix 45
AE9
F
376 379Right-handed 310
Helix 46
AF1
G
36 40Right-handed 310
Helix 47
AF2
G
93 98Right-handed alpha
Helix 48
AF3
G
132 138Right-handed alpha
Helix 49
AF4
G
143 171Right-handed alpha
Helix 50
AF5
G
197 210Right-handed alpha
Helix 51
AF6
G
243 249Right-handed alpha
Helix 52
AF7
G
263 266Right-handed 310
Helix 53
AF8
G
348 352Right-handed 310
Helix 54
AF9
H
35 40Right-handed 310
Helix 55
AG1
H
133 138Right-handed alpha
Helix 56
AG2
H
143 171Right-handed alpha
Helix 57
AG3
H
197 211Right-handed alpha
Helix 58
AG4
H
243 249Right-handed alpha
Helix 59
AG5
H
252 256Right-handed 310
Helix 60
AG6
H
263 265Right-handed 310
Helix 61
AG7
I
133 138Right-handed alpha
Helix 62
AG8
I
143 171Right-handed alpha
Helix 63
AG9
I
197 208Right-handed alpha
Helix 64
AH1
I
243 249Right-handed alpha
Helix 65
AH2
I
262 266Right-handed alpha
Helix 66
AH3
I
348 352Right-handed 310
Helix 67
AH4
J
5 13Right-handed alpha
Helix 68
AH5
J
29 37Right-handed alpha
Helix 69
AH6
K
5 12Right-handed alpha
Helix 70
AH7
K
29 37Right-handed alpha
Helix 71
AH8
L
5 13Right-handed alpha
Helix 72
AH9
L
29 37Right-handed alpha
Helix 73
AI1
L
40 44Right-handed 310
Helix 74
AI2
M
6 13Right-handed alpha
Helix 75
AI3
M
29 37Right-handed alpha
Helix 76
AI4
N
5 13Right-handed alpha
Helix 77
AI5
N
29 37Right-handed alpha
Helix 78
AI6
O
6 12Right-handed alpha
Helix 79
AI7
O
29 37Right-handed alpha
Helix 80
AI8
O
40 44Right-handed 310
Helix 81
AI9
P
5 13Right-handed alpha
Helix 82
AJ1
P
29 37Right-handed alpha
Helix 83
AJ2
P
40 44Right-handed 310
Helix 84
AJ3
Q
5 13Right-handed alpha
Helix 85
AJ4
Q
29 37Right-handed alpha
Helix 86
AJ5
R
5 13Right-handed alpha
Helix 87
AJ6
R
30 38Right-handed alpha
Helix 88
AJ7
R
40 44Right-handed 310
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There are 56 sheets in PDB entry 9D82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 121first strand
Strand 2
A
52 54anti-parallel
Strand 3
B
21 22parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
57 58first strand
Strand 2
A
115 116anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
123 131first strand
Strand 2
A
362 370anti-parallel
Strand 3
A
341 345anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 175first strand
Strand 2
A
380 382parallel
Strand 3
A
318 321anti-parallel
Strand 4
A
235 240anti-parallel
Strand 5
A
282 287parallel
Strand 6
A
275 279anti-parallel
Strand 7
A
260 261anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
327 328first strand
Strand 2
A
372 373anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
42 44first strand
Strand 2
B
327 330parallel
Strand 3
B
372 373anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
53 58first strand
Strand 2
B
115 120anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
123 132first strand
Strand 2
B
361 370anti-parallel
Strand 3
B
341 345anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 176first strand
Strand 2
B
380 385parallel
Strand 3
B
316 321anti-parallel
Strand 4
B
235 240anti-parallel
Strand 5
B
282 287parallel
Strand 6
B
275 279anti-parallel
Strand 7
B
260 261anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
21 22first strand
Strand 2
H
53 58parallel
Strand 3
H
115 119anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
41 43first strand
Strand 2
C
326 329parallel
Strand 3
C
372 374anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
115 121first strand
Strand 2
C
52 58anti-parallel
Strand 3
D
21 22parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
115 121first strand
Strand 2
C
52 58anti-parallel
Strand 3
D
27 28parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
123 129first strand
Strand 2
C
364 370anti-parallel
Strand 3
C
341 343anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
174 176first strand
Strand 2
C
381 383parallel
Strand 3
C
318 320anti-parallel
Strand 4
C
237 240anti-parallel
Strand 5
C
283 287parallel
Strand 6
C
275 278anti-parallel
Strand 7
C
260 261anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
41 45first strand
Strand 2
D
326 331parallel
Strand 3
D
372 374anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
115 119first strand
Strand 2
D
52 58anti-parallel
Strand 3
E
20 22parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
72 73first strand
Strand 2
D
77 78anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 129first strand
Strand 2
D
363 367anti-parallel
Strand 3
D
341 345anti-parallel
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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
174 176first strand
Strand 2
D
381 383parallel
Strand 3
D
318 320anti-parallel
Strand 4
D
237 240anti-parallel
Strand 5
D
282 287parallel
Strand 6
D
275 279anti-parallel
Strand 7
D
260 261anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
42 43first strand
Strand 2
E
327 329parallel
Strand 3
E
372 373anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
115 119first strand
Strand 2
E
53 58anti-parallel
Strand 3
G
21 22parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
115 119first strand
Strand 2
E
53 58anti-parallel
Strand 3
G
27 28parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
123 129first strand
Strand 2
E
363 370anti-parallel
Strand 3
E
341 345anti-parallel
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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
174 176first strand
Strand 2
E
381 385parallel
Strand 3
E
316 319anti-parallel
Strand 4
E
237 240anti-parallel
Strand 5
E
282 287parallel
Strand 6
E
275 279anti-parallel
Strand 7
E
260 261anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
20 22first strand
Strand 2
G
52 58parallel
Strand 3
F
27 28parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
20 22first strand
Strand 2
G
52 58parallel
Strand 3
G
115 121anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
115 119first strand
Strand 2
F
53 58anti-parallel
Strand 3
H
21 22parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
115 119first strand
Strand 2
F
53 58anti-parallel
Strand 3
H
27 28parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
124 129first strand
Strand 2
F
363 369anti-parallel
Strand 3
F
341 345anti-parallel
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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
174 176first strand
Strand 2
F
381 383parallel
Strand 3
F
318 320anti-parallel
Strand 4
F
237 240anti-parallel
Strand 5
F
282 287parallel
Strand 6
F
275 279anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
293 299first strand
Strand 2
F
312 316anti-parallel
Strand 3
F
308 309anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
293 299first strand
Strand 2
F
312 316anti-parallel
Strand 3
F
385 386anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
326 327first strand
Strand 2
F
373 374anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
41 44first strand
Strand 2
G
327 330parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
123 126first strand
Strand 2
G
362 370anti-parallel
Strand 3
G
129 131anti-parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
123 126first strand
Strand 2
G
362 370anti-parallel
Strand 3
G
341 345anti-parallel
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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
260 261first strand
Strand 2
G
275 279anti-parallel
Strand 3
G
282 286anti-parallel
Strand 4
G
235 239parallel
Strand 5
G
316 320anti-parallel
Strand 6
G
380 384anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
41 45first strand
Strand 2
H
326 331parallel
Strand 3
H
373 374anti-parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 132first strand
Strand 2
H
361 370anti-parallel
Strand 3
H
341 345anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
174 176first strand
Strand 2
H
381 383parallel
Strand 3
H
319 320anti-parallel
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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
237 240first strand
Strand 2
H
283 287parallel
Strand 3
H
275 278anti-parallel
Strand 4
H
260 261anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
315 316first strand
Strand 2
H
385 386anti-parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
41 43first strand
Strand 2
I
326 330parallel
Strand 3
I
373 374anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
53 58first strand
Strand 2
I
115 120anti-parallel
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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
124 132first strand
Strand 2
I
361 369anti-parallel
Strand 3
I
341 345anti-parallel
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There are 7 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
174 176first strand
Strand 2
I
381 386parallel
Strand 3
I
315 320anti-parallel
Strand 4
I
235 239anti-parallel
Strand 5
I
282 286parallel
Strand 6
I
275 279anti-parallel
Strand 7
I
260 261anti-parallel
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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
15 18first strand
Strand 2
J
25 28anti-parallel
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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
15 16first strand
Strand 2
K
27 28anti-parallel
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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
15 19first strand
Strand 2
L
24 28anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
15 18first strand
Strand 2
M
25 28anti-parallel
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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
15 18first strand
Strand 2
N
25 28anti-parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
15 19first strand
Strand 2
O
24 28anti-parallel
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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
15 18first strand
Strand 2
P
25 28anti-parallel
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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
15 17first strand
Strand 2
Q
26 28anti-parallel
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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
15 18first strand
Strand 2
R
25 28anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il