Analysis of interatomic Contacts of Structural Units in PDB entry:
9D83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D83 entry

There are 6 chains in PDB entry 9D83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 182LYS 679
B
 LYS 2TRP 233
C
 VAL 3ASP 200
D
 VAL 16SER 74
E
 GLY 10SER 74
F
 PHE 19SER 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9D83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
182 189Right-handed alpha
Helix 2
AA2
A
189 194Right-handed alpha
Helix 3
AA3
A
197 202Right-handed alpha
Helix 4
AA4
A
240 242Right-handed 310
Helix 5
AA5
A
253 257Right-handed 310
Helix 6
AA6
A
268 275Right-handed alpha
Helix 7
AA7
A
289 293Right-handed 310
Helix 8
AA8
A
308 311Right-handed 310
Helix 9
AA9
A
374 378Right-handed 310
Helix 10
AB1
A
379 399Right-handed alpha
Helix 11
AB2
A
413 423Right-handed alpha
Helix 12
AB3
A
433 437Right-handed alpha
Helix 13
AB4
A
448 458Right-handed alpha
Helix 14
AB5
A
483 488Right-handed alpha
Helix 15
AB6
A
491 520Right-handed alpha
Helix 16
AB7
A
524 533Right-handed alpha
Helix 17
AB8
A
556 575Right-handed alpha
Helix 18
AB9
A
579 594Right-handed alpha
Helix 19
AC1
A
596 606Right-handed alpha
Helix 20
AC2
A
611 669Right-handed alpha
Helix 21
AC3
A
670 679Right-handed alpha
Helix 22
AC4
B
3 12Right-handed alpha
Helix 23
AC5
B
18 25Right-handed 310
Helix 24
AC6
B
31 50Right-handed alpha
Helix 25
AC7
B
71 75Right-handed 310
Helix 26
AC8
B
172 186Right-handed alpha
Helix 27
AC9
B
190 215Right-handed alpha
Helix 28
AD1
B
226 232Right-handed alpha
Helix 29
AD2
C
9 13Right-handed 310
Helix 30
AD3
C
22 40Right-handed alpha
Helix 31
AD4
C
45 56Right-handed alpha
Helix 32
AD5
C
59 70Right-handed alpha
Helix 33
AD6
C
71 111Right-handed alpha
Helix 34
AD7
C
113 128Right-handed alpha
Helix 35
AD8
C
138 177Right-handed alpha
Helix 36
AD9
C
183 186Right-handed 310
Helix 37
AE1
C
187 199Right-handed alpha
Helix 38
AE2
D
22 33Right-handed alpha
Helix 39
AE3
D
33 46Right-handed alpha
Helix 40
AE4
D
55 61Right-handed alpha
Helix 41
AE5
E
12 21Right-handed alpha
Helix 42
AE6
E
23 33Right-handed alpha
Helix 43
AE7
E
33 46Right-handed alpha
Helix 44
AE8
F
21 33Right-handed alpha
Helix 45
AE9
F
33 47Right-handed alpha
Helix 46
AF1
F
55 62Right-handed alpha
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There are 9 sheets in PDB entry 9D83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
259 262anti-parallel
Strand 3
A
317 323anti-parallel
Strand 4
A
332 339anti-parallel
Strand 5
A
342 348anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
313 315anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
438 440anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
54 60anti-parallel
Strand 3
B
143 150anti-parallel
Strand 4
B
100 107anti-parallel
Strand 5
B
113 114anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
132 134anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 131first strand
Strand 2
C
134 135anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
F
51 53anti-parallel
Strand 3
F
69 71parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 53first strand
Strand 2
D
69 71parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 53first strand
Strand 2
E
69 71parallel
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