Analysis of interatomic Contacts of Structural Units in PDB entry:
9D84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D84 entry

There are 2 chains in PDB entry 9D84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ILE 777
B
 TYR 123SER 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9D84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 13Right-handed 310
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
29 31Right-handed 310
Helix 4
AA4
A
87 94Right-handed alpha
Helix 5
AA5
A
157 165Right-handed alpha
Helix 6
AA6
A
168 173Right-handed 310
Helix 7
AA7
A
180 209Right-handed alpha
Helix 8
AA8
A
221 226Right-handed alpha
Helix 9
AA9
A
249 263Right-handed alpha
Helix 10
AB1
A
277 283Right-handed alpha
Helix 11
AB2
A
284 288Right-handed 310
Helix 12
AB3
A
301 306Right-handed alpha
Helix 13
AB4
A
307 311Right-handed 310
Helix 14
AB5
A
312 330Right-handed alpha
Helix 15
AB6
A
348 365Right-handed alpha
Helix 16
AB7
A
371 375Right-handed 310
Helix 17
AB8
A
380 385Right-handed alpha
Helix 18
AB9
A
392 410Right-handed alpha
Helix 19
AC1
A
497 502Right-handed alpha
Helix 20
AC2
A
507 513Right-handed 310
Helix 21
AC3
A
535 539Right-handed 310
Helix 22
AC4
A
580 584Right-handed 310
Helix 23
AC5
A
628 632Right-handed 310
Helix 24
AC6
A
635 640Right-handed alpha
Helix 25
AC7
B
129 132Right-handed 310
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There are 13 sheets in PDB entry 9D84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
47 50parallel
Strand 3
A
55 58anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
83 86anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
115 118parallel
Strand 3
A
124 126anti-parallel
Strand 4
A
153 154anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 272first strand
Strand 2
A
213 220parallel
Strand 3
A
295 299parallel
Strand 4
A
333 337parallel
Strand 5
A
368 370parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
245 246anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
569 579anti-parallel
Strand 3
A
460 461anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
569 579anti-parallel
Strand 3
A
479 488anti-parallel
Strand 4
A
543 549anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 438first strand
Strand 2
A
468 475anti-parallel
Strand 3
A
552 559anti-parallel
Strand 4
A
493 495anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 605first strand
Strand 2
A
760 768anti-parallel
Strand 3
A
652 658anti-parallel
Strand 4
A
663 669anti-parallel
Strand 5
A
677 685anti-parallel
Strand 6
A
695 709anti-parallel
Strand 7
A
743 750anti-parallel
Strand 8
A
622 626anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 605first strand
Strand 2
A
760 768anti-parallel
Strand 3
A
652 658anti-parallel
Strand 4
A
663 669anti-parallel
Strand 5
A
677 685anti-parallel
Strand 6
A
695 709anti-parallel
Strand 7
A
723 733anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 619first strand
Strand 2
A
757 758anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
186 190anti-parallel
Strand 3
B
151 154anti-parallel
Strand 4
B
157 160anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 141first strand
Strand 2
B
173 182anti-parallel
Strand 3
B
165 168anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il