Analysis of interatomic Contacts of Structural Units in PDB entry:
9D87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D87 entry

There is 1 chain in PDB entry 9D87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLY 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9D87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 34Right-handed 310
Helix 2
AA2
A
35 43Right-handed alpha
Helix 3
AA3
A
66 71Right-handed 310
Helix 4
AA4
A
75 93Right-handed alpha
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
136 168Right-handed alpha
Helix 7
AA7
A
170 178Right-handed alpha
Helix 8
AA8
A
183 201Right-handed alpha
Helix 9
AA9
A
201 207Right-handed alpha
Helix 10
AB1
A
212 217Right-handed alpha
Helix 11
AB2
A
218 222Right-handed 310
Helix 12
AB3
A
233 247Right-handed alpha
Helix 13
AB4
A
258 263Right-handed alpha
Helix 14
AB5
A
263 276Right-handed alpha
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There are 3 sheets in PDB entry 9D87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 17anti-parallel
Strand 3
A
60 61anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 17anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
21 25parallel
Strand 5
A
97 102parallel
Strand 6
A
120 126parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
250 253parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il