Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D8J entry

There are 3 chains in PDB entry 9D8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 15	SER 1157
B	CYS 15	SER 1157
C	CYS 15	SER 1157

There are 75 helices in PDB entry 9D8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	146	148	Right-handed 310
Helix 2	AA2	A	291	301	Right-handed alpha
Helix 3	AA3	A	334	340	Right-handed alpha
Helix 4	AA4	A	361	365	Right-handed 310
Helix 5	AA5	A	380	384	Right-handed 310
Helix 6	AA6	A	402	407	Right-handed 310
Helix 7	AA7	A	413	419	Right-handed alpha
Helix 8	AA8	A	498	501	Right-handed 310
Helix 9	AA9	A	612	622	Right-handed alpha
Helix 10	AB1	A	733	740	Right-handed alpha
Helix 11	AB2	A	742	750	Right-handed alpha
Helix 12	AB3	A	751	753	Right-handed 310
Helix 13	AB4	A	754	779	Right-handed alpha
Helix 14	AB5	A	812	822	Right-handed alpha
Helix 15	AB6	A	845	852	Right-handed alpha
Helix 16	AB7	A	862	880	Right-handed alpha
Helix 17	AB8	A	883	887	Right-handed 310
Helix 18	AB9	A	893	905	Right-handed alpha
Helix 19	AC1	A	908	914	Right-handed alpha
Helix 20	AC2	A	915	934	Right-handed alpha
Helix 21	AC3	A	941	961	Right-handed alpha
Helix 22	AC4	A	962	964	Right-handed 310
Helix 23	AC5	A	972	980	Right-handed alpha
Helix 24	AC6	A	981	1029	Right-handed alpha
Helix 25	AC7	A	1135	1157	Right-handed alpha
Helix 26	AC8	B	146	148	Right-handed 310
Helix 27	AC9	B	291	301	Right-handed alpha
Helix 28	AD1	B	334	340	Right-handed alpha
Helix 29	AD2	B	361	365	Right-handed 310
Helix 30	AD3	B	380	384	Right-handed 310
Helix 31	AD4	B	402	407	Right-handed 310
Helix 32	AD5	B	413	419	Right-handed alpha
Helix 33	AD6	B	498	501	Right-handed 310
Helix 34	AD7	B	612	622	Right-handed alpha
Helix 35	AD8	B	733	740	Right-handed alpha
Helix 36	AD9	B	742	750	Right-handed alpha
Helix 37	AE1	B	751	753	Right-handed 310
Helix 38	AE2	B	754	779	Right-handed alpha
Helix 39	AE3	B	812	822	Right-handed alpha
Helix 40	AE4	B	845	852	Right-handed alpha
Helix 41	AE5	B	862	880	Right-handed alpha
Helix 42	AE6	B	883	887	Right-handed 310
Helix 43	AE7	B	893	905	Right-handed alpha
Helix 44	AE8	B	908	914	Right-handed alpha
Helix 45	AE9	B	915	934	Right-handed alpha
Helix 46	AF1	B	941	961	Right-handed alpha
Helix 47	AF2	B	962	964	Right-handed 310
Helix 48	AF3	B	972	980	Right-handed alpha
Helix 49	AF4	B	981	1029	Right-handed alpha
Helix 50	AF5	B	1135	1157	Right-handed alpha
Helix 51	AF6	C	146	148	Right-handed 310
Helix 52	AF7	C	291	301	Right-handed alpha
Helix 53	AF8	C	334	340	Right-handed alpha
Helix 54	AF9	C	361	365	Right-handed 310
Helix 55	AG1	C	380	384	Right-handed 310
Helix 56	AG2	C	402	407	Right-handed 310
Helix 57	AG3	C	413	419	Right-handed alpha
Helix 58	AG4	C	498	501	Right-handed 310
Helix 59	AG5	C	612	622	Right-handed alpha
Helix 60	AG6	C	733	740	Right-handed alpha
Helix 61	AG7	C	742	750	Right-handed alpha
Helix 62	AG8	C	751	753	Right-handed 310
Helix 63	AG9	C	754	779	Right-handed alpha
Helix 64	AH1	C	812	822	Right-handed alpha
Helix 65	AH2	C	845	852	Right-handed alpha
Helix 66	AH3	C	862	880	Right-handed alpha
Helix 67	AH4	C	883	887	Right-handed 310
Helix 68	AH5	C	893	905	Right-handed alpha
Helix 69	AH6	C	908	914	Right-handed alpha
Helix 70	AH7	C	915	934	Right-handed alpha
Helix 71	AH8	C	941	961	Right-handed alpha
Helix 72	AH9	C	962	964	Right-handed 310
Helix 73	AI1	C	972	980	Right-handed alpha
Helix 74	AI2	C	981	1029	Right-handed alpha
Helix 75	AI3	C	1135	1157	Right-handed alpha

There are 51 sheets in PDB entry 9D8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	62	70	anti-parallel
Strand 3	A	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	62	70	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	88	95	anti-parallel
Strand 5	A	187	195	anti-parallel
Strand 6	A	198	206	anti-parallel
Strand 7	A	221	226	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	C	561	563	parallel
Strand 3	C	569	573	anti-parallel
Strand 4	C	580	584	anti-parallel
Strand 5	C	542	550	anti-parallel
Strand 6	C	535	539	anti-parallel
Strand 7	C	321	325	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	56	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	287	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	234	242	anti-parallel
Strand 3	A	140	145	parallel
Strand 4	A	149	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	234	242	anti-parallel
Strand 3	A	100	106	anti-parallel
Strand 4	A	115	120	anti-parallel
Strand 5	A	125	130	anti-parallel
Strand 6	A	166	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	316	first strand
Strand 2	A	588	595	anti-parallel
Strand 3	A	605	609	anti-parallel
Strand 4	A	644	647	anti-parallel
Strand 5	A	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	325	first strand
Strand 2	A	535	539	parallel
Strand 3	A	542	550	anti-parallel
Strand 4	A	580	584	anti-parallel
Strand 5	A	569	573	anti-parallel
Strand 6	A	561	563	anti-parallel
Strand 7	B	43	44	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	392	400	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	428	434	anti-parallel
Strand 5	A	373	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	520	521	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	488	490	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	484	485	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	656	first strand
Strand 2	A	687	693	parallel
Strand 3	A	666	671	anti-parallel
Strand 4	A	660	663	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	700	first strand
Strand 2	B	783	786	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	711	first strand
Strand 2	A	1068	1074	anti-parallel
Strand 3	A	1090	1093	anti-parallel
Strand 4	A	1098	1102	anti-parallel
Strand 5	A	1105	1110	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	724	first strand
Strand 2	A	1055	1065	anti-parallel
Strand 3	A	1043	1052	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	732	first strand
Strand 2	A	854	857	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	786	first strand
Strand 2	C	697	700	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1116	1118	first strand
Strand 2	A	1083	1086	anti-parallel
Strand 3	A	1077	1078	anti-parallel
Strand 4	A	1129	1130	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	62	70	anti-parallel
Strand 3	B	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	62	70	anti-parallel
Strand 3	B	260	266	anti-parallel
Strand 4	B	88	95	anti-parallel
Strand 5	B	187	195	anti-parallel
Strand 6	B	198	206	anti-parallel
Strand 7	B	221	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	56	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	140	145	parallel
Strand 4	B	149	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	100	106	anti-parallel
Strand 4	B	115	120	anti-parallel
Strand 5	B	125	130	anti-parallel
Strand 6	B	166	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	588	595	anti-parallel
Strand 3	B	605	609	anti-parallel
Strand 4	B	644	647	anti-parallel
Strand 5	B	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	325	first strand
Strand 2	B	535	539	parallel
Strand 3	B	542	550	anti-parallel
Strand 4	B	580	584	anti-parallel
Strand 5	B	569	573	anti-parallel
Strand 6	B	561	563	anti-parallel
Strand 7	C	43	44	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	392	400	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	428	434	anti-parallel
Strand 5	B	373	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	520	521	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	488	490	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	471	first strand
Strand 2	B	484	485	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	656	first strand
Strand 2	B	687	693	parallel
Strand 3	B	666	671	anti-parallel
Strand 4	B	660	663	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	700	first strand
Strand 2	C	783	786	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	711	first strand
Strand 2	B	1068	1074	anti-parallel
Strand 3	B	1090	1093	anti-parallel
Strand 4	B	1098	1102	anti-parallel
Strand 5	B	1105	1110	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	724	first strand
Strand 2	B	1055	1065	anti-parallel
Strand 3	B	1043	1052	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	854	857	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1116	1118	first strand
Strand 2	B	1083	1086	anti-parallel
Strand 3	B	1077	1078	anti-parallel
Strand 4	B	1129	1130	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	62	70	anti-parallel
Strand 3	C	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	62	70	anti-parallel
Strand 3	C	260	266	anti-parallel
Strand 4	C	88	95	anti-parallel
Strand 5	C	187	195	anti-parallel
Strand 6	C	198	206	anti-parallel
Strand 7	C	221	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	56	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	234	242	anti-parallel
Strand 3	C	140	145	parallel
Strand 4	C	149	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	234	242	anti-parallel
Strand 3	C	100	106	anti-parallel
Strand 4	C	115	120	anti-parallel
Strand 5	C	125	130	anti-parallel
Strand 6	C	166	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	588	595	anti-parallel
Strand 3	C	605	609	anti-parallel
Strand 4	C	644	647	anti-parallel
Strand 5	C	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	392	400	anti-parallel
Strand 3	C	503	511	anti-parallel
Strand 4	C	428	434	anti-parallel
Strand 5	C	373	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	520	521	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	451	first strand
Strand 2	C	488	490	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	484	485	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	656	first strand
Strand 2	C	687	693	parallel
Strand 3	C	666	671	anti-parallel
Strand 4	C	660	663	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	711	first strand
Strand 2	C	1068	1074	anti-parallel
Strand 3	C	1090	1093	anti-parallel
Strand 4	C	1098	1102	anti-parallel
Strand 5	C	1105	1110	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	714	724	first strand
Strand 2	C	1055	1065	anti-parallel
Strand 3	C	1043	1052	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	729	732	first strand
Strand 2	C	854	857	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1116	1118	first strand
Strand 2	C	1083	1086	anti-parallel
Strand 3	C	1077	1078	anti-parallel
Strand 4	C	1129	1130	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8J