Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D8K entry

There are 3 chains in PDB entry 9D8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 15	SER 1157
B	CYS 15	SER 1157
C	CYS 15	SER 1157

There are 72 helices in PDB entry 9D8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	334	340	Right-handed alpha
Helix 3	AA3	A	362	368	Right-handed alpha
Helix 4	AA4	A	380	384	Right-handed 310
Helix 5	AA5	A	413	419	Right-handed alpha
Helix 6	AA6	A	435	440	Right-handed alpha
Helix 7	AA7	A	612	622	Right-handed alpha
Helix 8	AA8	A	733	740	Right-handed alpha
Helix 9	AA9	A	742	750	Right-handed alpha
Helix 10	AB1	A	751	753	Right-handed 310
Helix 11	AB2	A	754	779	Right-handed alpha
Helix 12	AB3	A	812	822	Right-handed alpha
Helix 13	AB4	A	836	840	Right-handed 310
Helix 14	AB5	A	844	851	Right-handed alpha
Helix 15	AB6	A	862	880	Right-handed alpha
Helix 16	AB7	A	882	886	Right-handed 310
Helix 17	AB8	A	893	905	Right-handed alpha
Helix 18	AB9	A	908	915	Right-handed alpha
Helix 19	AC1	A	915	931	Right-handed alpha
Helix 20	AC2	A	941	961	Right-handed alpha
Helix 21	AC3	A	962	964	Right-handed 310
Helix 22	AC4	A	972	980	Right-handed alpha
Helix 23	AC5	A	981	1028	Right-handed alpha
Helix 24	AC6	A	1135	1157	Right-handed alpha
Helix 25	AC7	B	291	301	Right-handed alpha
Helix 26	AC8	B	334	340	Right-handed alpha
Helix 27	AC9	B	346	350	Right-handed 310
Helix 28	AD1	B	364	369	Right-handed alpha
Helix 29	AD2	B	380	384	Right-handed 310
Helix 30	AD3	B	402	407	Right-handed 310
Helix 31	AD4	B	413	419	Right-handed alpha
Helix 32	AD5	B	435	440	Right-handed alpha
Helix 33	AD6	B	612	623	Right-handed alpha
Helix 34	AD7	B	733	740	Right-handed alpha
Helix 35	AD8	B	742	750	Right-handed alpha
Helix 36	AD9	B	751	753	Right-handed 310
Helix 37	AE1	B	756	779	Right-handed alpha
Helix 38	AE2	B	812	822	Right-handed alpha
Helix 39	AE3	B	862	880	Right-handed alpha
Helix 40	AE4	B	893	905	Right-handed alpha
Helix 41	AE5	B	909	915	Right-handed alpha
Helix 42	AE6	B	915	929	Right-handed alpha
Helix 43	AE7	B	929	934	Right-handed alpha
Helix 44	AE8	B	941	961	Right-handed alpha
Helix 45	AE9	B	962	964	Right-handed 310
Helix 46	AF1	B	972	978	Right-handed alpha
Helix 47	AF2	B	981	1028	Right-handed alpha
Helix 48	AF3	B	1135	1157	Right-handed alpha
Helix 49	AF4	C	291	301	Right-handed alpha
Helix 50	AF5	C	334	340	Right-handed alpha
Helix 51	AF6	C	346	350	Right-handed 310
Helix 52	AF7	C	361	368	Right-handed 310
Helix 53	AF8	C	380	386	Right-handed 310
Helix 54	AF9	C	403	407	Right-handed 310
Helix 55	AG1	C	498	502	Right-handed 310
Helix 56	AG2	C	612	622	Right-handed alpha
Helix 57	AG3	C	733	738	Right-handed alpha
Helix 58	AG4	C	742	750	Right-handed alpha
Helix 59	AG5	C	751	753	Right-handed 310
Helix 60	AG6	C	754	779	Right-handed alpha
Helix 61	AG7	C	812	822	Right-handed alpha
Helix 62	AG8	C	845	851	Right-handed alpha
Helix 63	AG9	C	862	881	Right-handed alpha
Helix 64	AH1	C	882	887	Right-handed 310
Helix 65	AH2	C	893	905	Right-handed alpha
Helix 66	AH3	C	908	915	Right-handed alpha
Helix 67	AH4	C	915	934	Right-handed alpha
Helix 68	AH5	C	941	961	Right-handed alpha
Helix 69	AH6	C	962	964	Right-handed 310
Helix 70	AH7	C	972	980	Right-handed alpha
Helix 71	AH8	C	981	1029	Right-handed alpha
Helix 72	AH9	C	1135	1157	Right-handed alpha

There are 47 sheets in PDB entry 9D8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	62	68	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	88	95	anti-parallel
Strand 5	A	187	193	anti-parallel
Strand 6	A	199	206	anti-parallel
Strand 7	A	222	226	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	56	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	287	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	100	106	anti-parallel
Strand 4	A	115	120	anti-parallel
Strand 5	A	125	130	anti-parallel
Strand 6	A	166	170	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	241	242	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	316	first strand
Strand 2	A	588	596	anti-parallel
Strand 3	A	605	609	anti-parallel
Strand 4	A	644	647	anti-parallel
Strand 5	A	638	641	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	392	400	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	428	434	anti-parallel
Strand 5	A	371	377	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	488	490	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	484	485	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	539	first strand
Strand 2	A	542	550	anti-parallel
Strand 3	A	580	584	anti-parallel
Strand 4	A	569	573	anti-parallel
Strand 5	A	561	563	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	651	first strand
Strand 2	A	687	692	parallel
Strand 3	A	666	671	anti-parallel
Strand 4	A	660	663	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	700	first strand
Strand 2	B	783	786	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	711	first strand
Strand 2	A	1068	1074	anti-parallel
Strand 3	A	1090	1093	anti-parallel
Strand 4	A	1098	1101	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	724	first strand
Strand 2	A	1055	1065	anti-parallel
Strand 3	A	1043	1052	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	732	first strand
Strand 2	A	854	856	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	786	first strand
Strand 2	C	697	700	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1116	1121	first strand
Strand 2	A	1082	1086	anti-parallel
Strand 3	A	1077	1078	anti-parallel
Strand 4	A	1129	1130	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	62	68	anti-parallel
Strand 3	B	260	264	anti-parallel
Strand 4	B	88	95	anti-parallel
Strand 5	B	187	195	anti-parallel
Strand 6	B	198	206	anti-parallel
Strand 7	B	221	226	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	56	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	284	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	234	243	anti-parallel
Strand 3	B	100	106	anti-parallel
Strand 4	B	115	121	anti-parallel
Strand 5	B	124	134	anti-parallel
Strand 6	B	158	170	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	234	243	parallel
Strand 4	B	255	256	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	588	595	anti-parallel
Strand 3	B	605	609	anti-parallel
Strand 4	B	644	647	anti-parallel
Strand 5	B	639	640	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	535	539	parallel
Strand 3	B	542	550	anti-parallel
Strand 4	B	580	584	anti-parallel
Strand 5	B	569	573	anti-parallel
Strand 6	B	561	563	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	392	400	anti-parallel
Strand 3	B	503	510	anti-parallel
Strand 4	B	428	434	anti-parallel
Strand 5	B	373	377	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	488	490	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	471	first strand
Strand 2	B	484	485	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	687	692	parallel
Strand 3	B	666	671	anti-parallel
Strand 4	B	660	663	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	698	first strand
Strand 2	C	783	784	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	709	first strand
Strand 2	B	1070	1073	anti-parallel
Strand 3	B	1090	1093	anti-parallel
Strand 4	B	1098	1101	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	724	first strand
Strand 2	B	1055	1065	anti-parallel
Strand 3	B	1043	1052	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	854	857	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1116	1118	first strand
Strand 2	B	1083	1086	anti-parallel
Strand 3	B	1077	1078	anti-parallel
Strand 4	B	1129	1130	parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	62	68	anti-parallel
Strand 3	C	260	266	anti-parallel
Strand 4	C	88	95	anti-parallel
Strand 5	C	187	195	anti-parallel
Strand 6	C	198	206	anti-parallel
Strand 7	C	222	226	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	56	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	234	242	anti-parallel
Strand 3	C	140	145	parallel
Strand 4	C	149	153	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	234	242	anti-parallel
Strand 3	C	100	106	anti-parallel
Strand 4	C	115	120	anti-parallel
Strand 5	C	125	130	anti-parallel
Strand 6	C	166	170	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	588	595	anti-parallel
Strand 3	C	605	609	anti-parallel
Strand 4	C	644	647	anti-parallel
Strand 5	C	638	641	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	392	399	anti-parallel
Strand 3	C	504	511	anti-parallel
Strand 4	C	428	434	anti-parallel
Strand 5	C	373	377	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	520	521	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	451	first strand
Strand 2	C	488	490	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	484	485	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	539	first strand
Strand 2	C	542	543	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	547	550	first strand
Strand 2	C	580	584	anti-parallel
Strand 3	C	571	573	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	656	first strand
Strand 2	C	687	693	parallel
Strand 3	C	666	671	anti-parallel
Strand 4	C	660	663	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	711	first strand
Strand 2	C	1068	1074	anti-parallel
Strand 3	C	1090	1093	anti-parallel
Strand 4	C	1098	1101	anti-parallel
Strand 5	C	1109	1110	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	714	724	first strand
Strand 2	C	1055	1065	anti-parallel
Strand 3	C	1043	1052	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	731	732	first strand
Strand 2	C	854	855	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1116	1121	first strand
Strand 2	C	1082	1086	anti-parallel
Strand 3	C	1077	1078	anti-parallel
Strand 4	C	1129	1130	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8K