Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D8P entry

There are 4 chains in PDB entry 9D8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 41LYS 442
B
 ASP 2VAL 102
C
 MET 17CYS 112
D
 LEU 73GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9D8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 122Right-handed 310
Helix 2
AA2
A
404 417Right-handed alpha
Helix 3
AA3
A
418 423Right-handed 310
Helix 4
AA4
A
424 432Right-handed alpha
Helix 5
AA5
A
434 442Right-handed alpha
Helix 6
AA6
B
23 36Right-handed alpha
Helix 7
AA7
B
38 42Right-handed 310
Helix 8
AA8
C
33 37Right-handed alpha
Helix 9
AA9
C
39 46Right-handed alpha
Helix 10
AB1
C
66 84Right-handed alpha
Helix 11
AB2
C
99 111Right-handed alpha
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There are 8 sheets in PDB entry 9D8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
395 399anti-parallel
Strand 3
A
376 380anti-parallel
Strand 4
A
368 371anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
131 135anti-parallel
Strand 4
A
140 143anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
193 196anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
243 245parallel
Strand 3
A
234 238anti-parallel
Strand 4
A
218 222anti-parallel
Strand 5
A
211 215anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
271 275anti-parallel
Strand 3
A
288 293anti-parallel
Strand 4
A
298 303anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 323first strand
Strand 2
A
327 331anti-parallel
Strand 3
A
343 347anti-parallel
Strand 4
A
353 355anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
390 391anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
12 18anti-parallel
Strand 5
C
28 32parallel
Strand 6
C
18 22anti-parallel
Strand 7
C
59 61parallel
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