Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D8S entry

There is 1 chain in PDB entry 9D8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 69GLN 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9D8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 75Right-handed alpha
Helix 2
AA2
A
110 112Right-handed 310
Helix 3
AA3
A
118 129Right-handed alpha
Helix 4
AA4
A
159 168Right-handed alpha
Helix 5
AA5
A
171 192Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
229 233Right-handed 310
Helix 8
AA8
A
234 240Right-handed alpha
Helix 9
AA9
A
241 242Right-handed 310
Helix 10
AB1
A
243 249Right-handed 310
Helix 11
AB2
A
252 270Right-handed alpha
Helix 12
AB3
A
278 289Right-handed alpha
Helix 13
AB4
A
295 301Right-handed 310
Helix 14
AB5
A
302 313Right-handed alpha
Helix 15
AB6
A
322 328Right-handed alpha
Helix 16
AB7
A
329 335Right-handed alpha
Helix 17
AB8
A
341 343Right-handed 310
Helix 18
AB9
A
344 361Right-handed alpha
Helix 19
AC1
A
362 377Right-handed alpha
Helix 20
AC2
A
378 393Right-handed alpha
Helix 21
AC3
A
401 417Right-handed alpha
Helix 22
AC4
A
419 425Right-handed 310
Helix 23
AC5
A
430 443Right-handed alpha
Helix 24
AC6
A
451 460Right-handed alpha
Helix 25
AC7
A
463 466Right-handed 310
Helix 26
AC8
A
467 477Right-handed alpha
Helix 27
AC9
A
525 532Right-handed alpha
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There are 2 sheets in PDB entry 9D8S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 84first strand
Strand 2
A
89 95anti-parallel
Strand 3
A
101 108anti-parallel
Strand 4
A
147 152anti-parallel
Strand 5
A
138 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
215 217anti-parallel
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