Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D8W entry

There are 3 chains in PDB entry 9D8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 41	HIS 272
B	VAL 13	THR 247
C	GLY 1	GLU 240

There are 18 helices in PDB entry 9D8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	57	Right-handed 310
Helix 2	AA2	A	58	63	Right-handed alpha
Helix 3	AA3	A	100	108	Right-handed alpha
Helix 4	AA4	A	160	165	Right-handed 310
Helix 5	AA5	A	206	210	Right-handed 310
Helix 6	AA6	A	214	218	Right-handed 310
Helix 7	AA7	B	35	37	Right-handed 310
Helix 8	AA8	B	43	48	Right-handed alpha
Helix 9	AA9	B	83	87	Right-handed 310
Helix 10	AB1	B	89	99	Right-handed alpha
Helix 11	AB2	B	142	147	Right-handed alpha
Helix 12	AB3	B	157	161	Right-handed 310
Helix 13	AB4	B	167	173	Right-handed 310
Helix 14	AB5	C	43	48	Right-handed alpha
Helix 15	AB6	C	62	68	Right-handed 310
Helix 16	AB7	C	92	96	Right-handed 310
Helix 17	AB8	C	97	104	Right-handed alpha
Helix 18	AB9	C	143	150	Right-handed alpha

There are 12 sheets in PDB entry 9D8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	C	184	186	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	74	first strand
Strand 2	A	235	253	anti-parallel
Strand 3	A	110	127	anti-parallel
Strand 4	A	180	184	anti-parallel
Strand 5	C	22	23	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	110	127	anti-parallel
Strand 3	A	235	253	anti-parallel
Strand 4	C	39	40	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	221	226	anti-parallel
Strand 3	A	142	148	anti-parallel
Strand 4	A	170	174	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	21	24	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	185	190	parallel
Strand 3	B	106	112	anti-parallel
Strand 4	B	226	234	anti-parallel
Strand 5	B	64	65	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	185	190	parallel
Strand 3	B	106	112	anti-parallel
Strand 4	B	226	234	anti-parallel
Strand 5	B	69	71	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	238	240	anti-parallel
Strand 3	B	102	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	78	82	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	175	179	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	106	119	anti-parallel
Strand 4	C	162	172	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	106	119	anti-parallel
Strand 4	C	223	227	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	85	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	128	134	anti-parallel
Strand 4	C	151	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8W