Analysis of interatomic Contacts of Structural Units in PDB entry:
9D8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D8X entry

There are 3 chains in PDB entry 9D8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 42HIS 272
B
 VAL 13GLN 248
C
 GLY 1ILE 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9D8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 57Right-handed 310
Helix 2
AA2
A
58 64Right-handed alpha
Helix 3
AA3
A
100 109Right-handed alpha
Helix 4
AA4
A
160 165Right-handed 310
Helix 5
AA5
A
214 218Right-handed 310
Helix 6
AA6
B
35 37Right-handed 310
Helix 7
AA7
B
43 48Right-handed alpha
Helix 8
AA8
B
89 99Right-handed alpha
Helix 9
AA9
B
142 147Right-handed alpha
Helix 10
AB1
B
148 152Right-handed 310
Helix 11
AB2
B
157 161Right-handed 310
Helix 12
AB3
B
167 173Right-handed 310
Helix 13
AB4
C
43 48Right-handed alpha
Helix 14
AB5
C
62 68Right-handed 310
Helix 15
AB6
C
97 104Right-handed alpha
Helix 16
AB7
C
143 150Right-handed alpha
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There are 12 sheets in PDB entry 9D8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
C
184 186parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
236 253anti-parallel
Strand 3
A
110 126anti-parallel
Strand 4
A
193 194anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
110 126anti-parallel
Strand 3
A
236 253anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
221 226anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
170 174anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
24 25anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
185 190parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
227 233anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
185 190parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
227 233anti-parallel
Strand 5
B
69 70anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
238 240anti-parallel
Strand 3
B
102 103anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
207 218anti-parallel
Strand 4
B
119 126anti-parallel
Strand 5
B
175 179anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 53first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
108 119anti-parallel
Strand 4
C
162 172anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
108 119anti-parallel
Strand 4
C
223 225anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
128 134anti-parallel
Strand 4
C
151 156anti-parallel
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