Analysis of interatomic Contacts of Structural Units in PDB entry:
9D91


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D91 entry

There is 1 chain in PDB entry 9D91 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9D91. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
53 57Right-handed 310
Helix 3
AA3
A
58 73Right-handed alpha
Helix 4
AA4
A
74 76Right-handed 310
Helix 5
AA5
A
87 98Right-handed alpha
Helix 6
AA6
A
122 133Right-handed alpha
Helix 7
AA7
A
134 140Right-handed 310
Helix 8
AA8
A
215 221Right-handed alpha
Helix 9
AA9
A
240 252Right-handed alpha
Helix 10
AB1
A
277 285Right-handed alpha
Helix 11
AB2
A
293 308Right-handed alpha
Helix 12
AB3
A
310 319Right-handed alpha
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There are 4 sheets in PDB entry 9D91. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
3 9parallel
Strand 3
A
78 83parallel
Strand 4
A
105 109parallel
Strand 5
A
143 146parallel
Strand 6
A
149 152anti-parallel
Strand 7
A
176 178anti-parallel
Strand 8
A
183 185anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
25 26anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
166 168anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
229 233parallel
Strand 3
A
257 261parallel
Strand 4
A
287 288parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il