Analysis of interatomic Contacts of Structural Units in PDB entry:
9D9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D9M entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 9D9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8SER 74
A
 ALA 76GLY 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9D9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
61 66Right-handed 310
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
97 104Right-handed alpha
Helix 6
AA6
A
105 108Right-handed 310
Helix 7
AA7
A
118 133Right-handed alpha
Helix 8
AA8
A
170 174Right-handed 310
Helix 9
AA9
A
188 193Right-handed 310
Helix 10
AB1
A
195 208Right-handed alpha
Helix 11
AB2
A
222 229Right-handed alpha
Helix 12
AB3
A
230 232Right-handed 310
Helix 13
AB4
A
279 297Right-handed alpha
Helix 14
AB5
A
299 310Right-handed alpha
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There are 2 sheets in PDB entry 9D9M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
34 39parallel
Strand 3
A
10 14parallel
Strand 4
A
70 73parallel
Strand 5
A
94 96parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
159 164parallel
Strand 4
A
109 114parallel
Strand 5
A
178 181parallel
Strand 6
A
215 219parallel
Strand 7
A
236 240parallel
Strand 8
A
247 255parallel
Strand 9
A
258 264anti-parallel
Strand 10
A
271 275anti-parallel
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