Analysis of interatomic Contacts of Structural Units in PDB entry:
9D9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D9U entry

There are 4 chains in PDB entry 9D9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 67	ASP 494
B	GLN 69	ASP 494
C	LYS 21	ALA 466
D	THR 22	ALA 466

There are 86 helices in PDB entry 9D9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	77	Right-handed alpha
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	93	110	Right-handed alpha
Helix 4	AA4	A	124	131	Right-handed alpha
Helix 5	AA5	A	132	148	Right-handed alpha
Helix 6	AA6	A	157	163	Right-handed alpha
Helix 7	AA7	A	166	179	Right-handed alpha
Helix 8	AA8	A	200	210	Right-handed alpha
Helix 9	AA9	A	233	240	Right-handed alpha
Helix 10	AB1	A	253	259	Right-handed alpha
Helix 11	AB2	A	270	286	Right-handed alpha
Helix 12	AB3	A	296	313	Right-handed alpha
Helix 13	AB4	A	314	341	Right-handed alpha
Helix 14	AB5	A	350	365	Right-handed alpha
Helix 15	AB6	A	411	421	Right-handed alpha
Helix 16	AB7	A	431	439	Right-handed alpha
Helix 17	AB8	A	448	453	Right-handed 310
Helix 18	AB9	A	454	471	Right-handed alpha
Helix 19	AC1	A	471	481	Right-handed alpha
Helix 20	AC2	A	488	493	Right-handed 310
Helix 21	AC3	B	70	77	Right-handed alpha
Helix 22	AC4	B	88	92	Right-handed 310
Helix 23	AC5	B	93	110	Right-handed alpha
Helix 24	AC6	B	125	129	Right-handed 310
Helix 25	AC7	B	132	148	Right-handed alpha
Helix 26	AC8	B	157	163	Right-handed alpha
Helix 27	AC9	B	166	179	Right-handed alpha
Helix 28	AD1	B	200	210	Right-handed alpha
Helix 29	AD2	B	233	240	Right-handed alpha
Helix 30	AD3	B	253	260	Right-handed alpha
Helix 31	AD4	B	270	275	Right-handed alpha
Helix 32	AD5	B	275	285	Right-handed alpha
Helix 33	AD6	B	296	313	Right-handed alpha
Helix 34	AD7	B	314	340	Right-handed alpha
Helix 35	AD8	B	350	365	Right-handed alpha
Helix 36	AD9	B	410	421	Right-handed alpha
Helix 37	AE1	B	431	439	Right-handed alpha
Helix 38	AE2	B	448	453	Right-handed 310
Helix 39	AE3	B	454	471	Right-handed alpha
Helix 40	AE4	B	471	481	Right-handed alpha
Helix 41	AE5	B	487	492	Right-handed alpha
Helix 42	AE6	C	32	35	Right-handed 310
Helix 43	AE7	C	36	42	Right-handed alpha
Helix 44	AE8	C	58	65	Right-handed alpha
Helix 45	AE9	C	66	68	Right-handed 310
Helix 46	AF1	C	77	81	Right-handed 310
Helix 47	AF2	C	95	110	Right-handed alpha
Helix 48	AF3	C	120	127	Right-handed alpha
Helix 49	AF4	C	129	140	Right-handed alpha
Helix 50	AF5	C	150	154	Right-handed 310
Helix 51	AF6	C	155	171	Right-handed alpha
Helix 52	AF7	C	176	181	Right-handed alpha
Helix 53	AF8	C	200	215	Right-handed alpha
Helix 54	AF9	C	229	235	Right-handed alpha
Helix 55	AG1	C	250	262	Right-handed alpha
Helix 56	AG2	C	274	290	Right-handed alpha
Helix 57	AG3	C	292	321	Right-handed alpha
Helix 58	AG4	C	334	348	Right-handed alpha
Helix 59	AG5	C	366	376	Right-handed alpha
Helix 60	AG6	C	390	401	Right-handed alpha
Helix 61	AG7	C	413	415	Right-handed 310
Helix 62	AG8	C	416	423	Right-handed alpha
Helix 63	AG9	C	445	463	Right-handed alpha
Helix 64	AH1	C	464	466	Right-handed 310
Helix 65	AH2	D	32	35	Right-handed 310
Helix 66	AH3	D	36	42	Right-handed alpha
Helix 67	AH4	D	58	63	Right-handed alpha
Helix 68	AH5	D	77	81	Right-handed 310
Helix 69	AH6	D	95	110	Right-handed alpha
Helix 70	AH7	D	120	127	Right-handed alpha
Helix 71	AH8	D	129	140	Right-handed alpha
Helix 72	AH9	D	150	154	Right-handed 310
Helix 73	AI1	D	155	171	Right-handed alpha
Helix 74	AI2	D	176	181	Right-handed alpha
Helix 75	AI3	D	200	215	Right-handed alpha
Helix 76	AI4	D	229	235	Right-handed alpha
Helix 77	AI5	D	250	262	Right-handed alpha
Helix 78	AI6	D	274	290	Right-handed alpha
Helix 79	AI7	D	292	321	Right-handed alpha
Helix 80	AI8	D	334	348	Right-handed alpha
Helix 81	AI9	D	366	376	Right-handed alpha
Helix 82	AJ1	D	390	401	Right-handed alpha
Helix 83	AJ2	D	413	415	Right-handed 310
Helix 84	AJ3	D	416	424	Right-handed alpha
Helix 85	AJ4	D	445	463	Right-handed alpha
Helix 86	AJ5	D	464	466	Right-handed 310

There are 14 sheets in PDB entry 9D9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	151	156	parallel
Strand 3	A	81	86	parallel
Strand 4	A	118	120	parallel
Strand 5	C	25	26	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	249	first strand
Strand 2	A	219	227	parallel
Strand 3	A	263	267	parallel
Strand 4	A	289	290	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	367	368	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	443	444	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	184	first strand
Strand 2	B	151	156	parallel
Strand 3	B	81	86	parallel
Strand 4	B	118	120	parallel
Strand 5	D	25	26	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	249	first strand
Strand 2	B	219	227	parallel
Strand 3	B	263	268	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	347	first strand
Strand 2	B	367	371	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	426	first strand
Strand 2	B	443	444	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	114	119	parallel
Strand 3	C	144	148	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	184	191	parallel
Strand 3	C	239	244	parallel
Strand 4	C	265	267	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	387	first strand
Strand 2	C	352	358	parallel
Strand 3	C	328	333	parallel
Strand 4	C	409	412	parallel
Strand 5	C	426	429	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	114	119	parallel
Strand 3	D	144	148	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	220	first strand
Strand 2	D	184	191	parallel
Strand 3	D	239	244	parallel
Strand 4	D	265	267	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	387	first strand
Strand 2	D	352	358	parallel
Strand 3	D	328	333	parallel
Strand 4	D	409	412	parallel
Strand 5	D	426	429	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D9U