Analysis of interatomic Contacts of Structural Units in PDB entry:
9DA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DA8 entry

There are 8 chains in PDB entry 9DA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 430
B	MET 1	SER 439
C	MET 1	GLN 426
D	LYS 274	VAL 300
K	MET 1	ALA 430
L	MET 1	SER 439
M	MET 1	GLN 426
N	LYS 274	VAL 300

There are120 helices in PDB entry 9DA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	28	Right-handed alpha
Helix 2	AA2	A	41	46	Right-handed alpha
Helix 3	AA3	A	70	79	Right-handed alpha
Helix 4	AA4	A	86	88	Right-handed 310
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	108	126	Right-handed alpha
Helix 7	AA7	A	141	159	Right-handed alpha
Helix 8	AA8	A	180	196	Right-handed alpha
Helix 9	AA9	A	203	214	Right-handed alpha
Helix 10	AB1	A	221	237	Right-handed alpha
Helix 11	AB2	A	238	241	Right-handed 310
Helix 12	AB3	A	249	258	Right-handed alpha
Helix 13	AB4	A	277	282	Right-handed 310
Helix 14	AB5	A	285	294	Right-handed alpha
Helix 15	AB6	A	304	308	Right-handed 310
Helix 16	AB7	A	322	337	Right-handed alpha
Helix 17	AB8	A	338	341	Right-handed 310
Helix 18	AB9	A	373	390	Right-handed alpha
Helix 19	AC1	A	394	400	Right-handed alpha
Helix 20	AC2	A	404	425	Right-handed alpha
Helix 21	AC3	B	10	28	Right-handed alpha
Helix 22	AC4	B	48	51	Right-handed 310
Helix 23	AC5	B	71	80	Right-handed alpha
Helix 24	AC6	B	88	90	Right-handed 310
Helix 25	AC7	B	102	108	Right-handed alpha
Helix 26	AC8	B	110	129	Right-handed alpha
Helix 27	AC9	B	143	161	Right-handed alpha
Helix 28	AD1	B	182	195	Right-handed alpha
Helix 29	AD2	B	205	216	Right-handed alpha
Helix 30	AD3	B	223	244	Right-handed alpha
Helix 31	AD4	B	251	260	Right-handed alpha
Helix 32	AD5	B	277	282	Right-handed alpha
Helix 33	AD6	B	287	295	Right-handed alpha
Helix 34	AD7	B	296	301	Right-handed 310
Helix 35	AD8	B	306	310	Right-handed 310
Helix 36	AD9	B	324	338	Right-handed alpha
Helix 37	AE1	B	383	400	Right-handed alpha
Helix 38	AE2	B	404	410	Right-handed alpha
Helix 39	AE3	B	414	436	Right-handed alpha
Helix 40	AE4	C	10	29	Right-handed alpha
Helix 41	AE5	C	40	46	Right-handed alpha
Helix 42	AE6	C	47	50	Right-handed 310
Helix 43	AE7	C	70	79	Right-handed alpha
Helix 44	AE8	C	86	88	Right-handed 310
Helix 45	AE9	C	100	107	Right-handed alpha
Helix 46	AF1	C	107	126	Right-handed alpha
Helix 47	AF2	C	141	159	Right-handed alpha
Helix 48	AF3	C	180	196	Right-handed alpha
Helix 49	AF4	C	203	214	Right-handed alpha
Helix 50	AF5	C	221	237	Right-handed alpha
Helix 51	AF6	C	238	241	Right-handed 310
Helix 52	AF7	C	249	258	Right-handed alpha
Helix 53	AF8	C	278	282	Right-handed 310
Helix 54	AF9	C	285	294	Right-handed alpha
Helix 55	AG1	C	295	299	Right-handed 310
Helix 56	AG2	C	304	308	Right-handed 310
Helix 57	AG3	C	322	337	Right-handed alpha
Helix 58	AG4	C	338	341	Right-handed 310
Helix 59	AG5	C	373	390	Right-handed alpha
Helix 60	AG6	C	394	400	Right-handed alpha
Helix 61	AG7	C	404	426	Right-handed alpha
Helix 62	AG8	K	10	28	Right-handed alpha
Helix 63	AG9	K	41	46	Right-handed alpha
Helix 64	AH1	K	47	49	Right-handed 310
Helix 65	AH2	K	70	79	Right-handed alpha
Helix 66	AH3	K	86	88	Right-handed 310
Helix 67	AH4	K	100	107	Right-handed alpha
Helix 68	AH5	K	107	126	Right-handed alpha
Helix 69	AH6	K	141	159	Right-handed alpha
Helix 70	AH7	K	180	196	Right-handed alpha
Helix 71	AH8	K	203	214	Right-handed alpha
Helix 72	AH9	K	221	237	Right-handed alpha
Helix 73	AI1	K	249	258	Right-handed alpha
Helix 74	AI2	K	285	294	Right-handed alpha
Helix 75	AI3	K	304	308	Right-handed 310
Helix 76	AI4	K	322	337	Right-handed alpha
Helix 77	AI5	K	338	341	Right-handed 310
Helix 78	AI6	K	374	390	Right-handed alpha
Helix 79	AI7	K	394	400	Right-handed alpha
Helix 80	AI8	K	404	425	Right-handed alpha
Helix 81	AI9	L	10	28	Right-handed alpha
Helix 82	AJ1	L	71	80	Right-handed alpha
Helix 83	AJ2	L	88	90	Right-handed 310
Helix 84	AJ3	L	102	108	Right-handed alpha
Helix 85	AJ4	L	110	128	Right-handed alpha
Helix 86	AJ5	L	143	161	Right-handed alpha
Helix 87	AJ6	L	182	195	Right-handed alpha
Helix 88	AJ7	L	205	216	Right-handed alpha
Helix 89	AJ8	L	223	244	Right-handed alpha
Helix 90	AJ9	L	251	260	Right-handed alpha
Helix 91	AK1	L	277	282	Right-handed alpha
Helix 92	AK2	L	287	295	Right-handed alpha
Helix 93	AK3	L	296	301	Right-handed 310
Helix 94	AK4	L	306	310	Right-handed 310
Helix 95	AK5	L	324	338	Right-handed alpha
Helix 96	AK6	L	383	400	Right-handed alpha
Helix 97	AK7	L	404	410	Right-handed alpha
Helix 98	AK8	L	414	436	Right-handed alpha
Helix 99	AK9	M	10	28	Right-handed alpha
Helix 100	AL1	M	41	46	Right-handed alpha
Helix 101	AL2	M	47	49	Right-handed 310
Helix 102	AL3	M	70	79	Right-handed alpha
Helix 103	AL4	M	86	88	Right-handed 310
Helix 104	AL5	M	100	107	Right-handed alpha
Helix 105	AL6	M	107	126	Right-handed alpha
Helix 106	AL7	M	141	159	Right-handed alpha
Helix 107	AL8	M	180	196	Right-handed alpha
Helix 108	AL9	M	203	214	Right-handed alpha
Helix 109	AM1	M	221	237	Right-handed alpha
Helix 110	AM2	M	238	241	Right-handed 310
Helix 111	AM3	M	249	258	Right-handed alpha
Helix 112	AM4	M	277	281	Right-handed 310
Helix 113	AM5	M	285	294	Right-handed alpha
Helix 114	AM6	M	295	299	Right-handed 310
Helix 115	AM7	M	304	308	Right-handed 310
Helix 116	AM8	M	322	337	Right-handed alpha
Helix 117	AM9	M	338	341	Right-handed 310
Helix 118	AN1	M	374	391	Right-handed alpha
Helix 119	AN2	M	394	400	Right-handed alpha
Helix 120	AN3	M	404	426	Right-handed alpha

There are 13 sheets in PDB entry 9DA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	63	67	parallel
Strand 3	A	2	9	parallel
Strand 4	A	129	136	parallel
Strand 5	A	164	169	parallel
Strand 6	A	198	202	parallel
Strand 7	A	265	271	parallel
Strand 8	A	364	371	anti-parallel
Strand 9	A	310	318	anti-parallel
Strand 10	A	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	2	9	parallel
Strand 4	B	131	140	parallel
Strand 5	B	165	171	parallel
Strand 6	B	200	204	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	273	first strand
Strand 2	B	373	381	anti-parallel
Strand 3	B	312	321	anti-parallel
Strand 4	B	351	356	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	63	67	parallel
Strand 3	C	2	9	parallel
Strand 4	C	129	136	parallel
Strand 5	C	164	169	parallel
Strand 6	C	198	202	parallel
Strand 7	C	265	271	parallel
Strand 8	C	364	371	anti-parallel
Strand 9	C	310	318	anti-parallel
Strand 10	C	349	354	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	92	first strand
Strand 2	K	63	67	parallel
Strand 3	K	2	9	parallel
Strand 4	K	129	138	parallel
Strand 5	K	164	169	parallel
Strand 6	K	198	202	parallel
Strand 7	K	265	271	parallel
Strand 8	K	363	371	anti-parallel
Strand 9	K	310	319	anti-parallel
Strand 10	K	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	54	first strand
Strand 2	K	58	61	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	92	94	first strand
Strand 2	L	65	69	parallel
Strand 3	L	3	9	parallel
Strand 4	L	132	140	parallel
Strand 5	L	165	171	parallel
Strand 6	L	200	204	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	56	first strand
Strand 2	L	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	269	273	first strand
Strand 2	L	373	381	anti-parallel
Strand 3	L	312	321	anti-parallel
Strand 4	L	351	356	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	90	92	first strand
Strand 2	M	63	67	parallel
Strand 3	M	2	9	parallel
Strand 4	M	129	138	parallel
Strand 5	M	164	169	parallel
Strand 6	M	198	202	parallel
Strand 7	M	265	271	parallel
Strand 8	M	363	371	anti-parallel
Strand 9	M	310	319	anti-parallel
Strand 10	M	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	51	53	first strand
Strand 2	M	59	61	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DA8