Analysis of interatomic Contacts of Structural Units in PDB entry:
9DAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DAK entry

There are 2 chains in PDB entry 9DAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20ILE 726
B
 LEU 389SER 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9DAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 53Right-handed alpha
Helix 2
AA2
A
56 81Right-handed alpha
Helix 3
AA3
A
82 84Right-handed 310
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
91 102Right-handed alpha
Helix 6
AA6
A
104 109Right-handed 310
Helix 7
AA7
A
110 130Right-handed alpha
Helix 8
AA8
A
145 153Right-handed alpha
Helix 9
AA9
A
157 172Right-handed alpha
Helix 10
AB1
A
172 194Right-handed alpha
Helix 11
AB2
A
198 204Right-handed alpha
Helix 12
AB3
A
205 208Right-handed 310
Helix 13
AB4
A
218 252Right-handed alpha
Helix 14
AB5
A
265 267Right-handed 310
Helix 15
AB6
A
275 277Right-handed 310
Helix 16
AB7
A
278 283Right-handed alpha
Helix 17
AB8
A
293 300Right-handed alpha
Helix 18
AB9
A
303 317Right-handed alpha
Helix 19
AC1
A
326 331Right-handed alpha
Helix 20
AC2
A
365 385Right-handed alpha
Helix 21
AC3
A
389 393Right-handed 310
Helix 22
AC4
A
399 413Right-handed alpha
Helix 23
AC5
A
414 421Right-handed alpha
Helix 24
AC6
A
431 447Right-handed alpha
Helix 25
AC7
A
449 466Right-handed alpha
Helix 26
AC8
A
469 471Right-handed 310
Helix 27
AC9
A
472 484Right-handed alpha
Helix 28
AD1
A
498 502Right-handed 310
Helix 29
AD2
A
503 508Right-handed alpha
Helix 30
AD3
A
513 533Right-handed alpha
Helix 31
AD4
A
538 542Right-handed 310
Helix 32
AD5
A
547 559Right-handed alpha
Helix 33
AD6
A
565 575Right-handed alpha
Helix 34
AD7
A
581 588Right-handed alpha
Helix 35
AD8
A
588 600Right-handed alpha
Helix 36
AD9
A
623 628Right-handed alpha
Helix 37
AE1
A
629 631Right-handed 310
Helix 38
AE2
A
635 658Right-handed alpha
Helix 39
AE3
A
665 667Right-handed 310
Helix 40
AE4
A
695 706Right-handed alpha
Helix 41
AE5
A
706 714Right-handed alpha
Helix 42
AE6
B
396 400Right-handed 310
Helix 43
AE7
B
411 416Right-handed alpha
Helix 44
AE8
B
430 436Right-handed alpha
Helix 45
AE9
B
450 458Right-handed 310
Helix 46
AF1
B
464 469Right-handed alpha
Helix 47
AF2
B
487 491Right-handed 310
Helix 48
AF3
B
531 543Right-handed alpha
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There are 7 sheets in PDB entry 9DAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
142 144anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 672first strand
Strand 2
A
679 686anti-parallel
Strand 3
A
689 693anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 672first strand
Strand 2
A
679 686anti-parallel
Strand 3
A
617 621anti-parallel
Strand 4
A
721 723anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 403first strand
Strand 2
B
443 448anti-parallel
Strand 3
B
582 589anti-parallel
Strand 4
B
478 485anti-parallel
Strand 5
B
420 427anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
515 521first strand
Strand 2
B
498 508anti-parallel
Strand 3
B
567 574anti-parallel
Strand 4
B
548 553anti-parallel
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