Analysis of interatomic Contacts of Structural Units in PDB entry:
9DAS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DAS entry

There are 2 chains in PDB entry 9DAS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4498THR 4770
B
 PRO 4497ASN 4773
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9DAS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4514 4537Right-handed alpha
Helix 2
AA2
A
4567 4579Right-handed alpha
Helix 3
AA3
A
4590 4603Right-handed alpha
Helix 4
AA4
A
4604 4610Right-handed alpha
Helix 5
AA5
A
4650 4655Right-handed alpha
Helix 6
AA6
A
4710 4726Right-handed alpha
Helix 7
AA7
A
4741 4746Right-handed alpha
Helix 8
AA8
A
4747 4749Right-handed 310
Helix 9
AA9
A
4759 4761Right-handed 310
Helix 10
AB1
A
4762 4769Right-handed alpha
Helix 11
AB2
B
4514 4539Right-handed alpha
Helix 12
AB3
B
4567 4579Right-handed alpha
Helix 13
AB4
B
4590 4603Right-handed alpha
Helix 14
AB5
B
4604 4610Right-handed alpha
Helix 15
AB6
B
4650 4655Right-handed alpha
Helix 16
AB7
B
4710 4726Right-handed alpha
Helix 17
AB8
B
4741 4746Right-handed alpha
Helix 18
AB9
B
4747 4749Right-handed 310
Helix 19
AC1
B
4759 4761Right-handed 310
Helix 20
AC2
B
4762 4769Right-handed alpha
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There are 8 sheets in PDB entry 9DAS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4555 4562first strand
Strand 2
A
4544 4551anti-parallel
Strand 3
A
4501 4508parallel
Strand 4
A
4614 4621parallel
Strand 5
A
4730 4736parallel
Strand 6
A
4755 4758parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4628 4630first strand
Strand 2
A
4697 4703anti-parallel
Strand 3
A
4685 4691anti-parallel
Strand 4
A
4677 4679anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4637 4639first strand
Strand 2
A
4648 4649anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4664 4666first strand
Strand 2
A
4669 4672anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4555 4562first strand
Strand 2
B
4544 4551anti-parallel
Strand 3
B
4501 4508parallel
Strand 4
B
4614 4621parallel
Strand 5
B
4730 4736parallel
Strand 6
B
4755 4758parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4628 4630first strand
Strand 2
B
4697 4703anti-parallel
Strand 3
B
4685 4691anti-parallel
Strand 4
B
4677 4679anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4637 4639first strand
Strand 2
B
4648 4649anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4664 4666first strand
Strand 2
B
4669 4672anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il