Analysis of interatomic Contacts of Structural Units in PDB entry:
9DAU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DAU entry

There are 2 chains in PDB entry 9DAU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 17	LYS 732
B	ASN 12	LYS 732

There are 54 helices in PDB entry 9DAU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	42	Right-handed alpha
Helix 2	AA2	A	47	69	Right-handed alpha
Helix 3	AA3	A	74	89	Right-handed alpha
Helix 4	AA4	A	91	110	Right-handed alpha
Helix 5	AA5	A	140	161	Right-handed alpha
Helix 6	AA6	A	162	171	Right-handed alpha
Helix 7	AA7	A	194	201	Right-handed alpha
Helix 8	AA8	A	215	233	Right-handed alpha
Helix 9	AA9	A	242	266	Right-handed alpha
Helix 10	AB1	A	270	297	Right-handed alpha
Helix 11	AB2	A	316	333	Right-handed alpha
Helix 12	AB3	A	362	377	Right-handed alpha
Helix 13	AB4	A	383	391	Right-handed alpha
Helix 14	AB5	A	428	437	Right-handed alpha
Helix 15	AB6	A	439	466	Right-handed alpha
Helix 16	AB7	A	467	468	Right-handed 310
Helix 17	AB8	A	469	472	Right-handed 310
Helix 18	AB9	A	473	478	Right-handed alpha
Helix 19	AC1	A	491	496	Right-handed 310
Helix 20	AC2	A	509	519	Right-handed alpha
Helix 21	AC3	A	521	524	Right-handed 310
Helix 22	AC4	A	525	551	Right-handed alpha
Helix 23	AC5	A	563	577	Right-handed alpha
Helix 24	AC6	A	601	610	Right-handed alpha
Helix 25	AC7	A	610	616	Right-handed alpha
Helix 26	AC8	A	634	648	Right-handed alpha
Helix 27	AC9	A	708	717	Right-handed alpha
Helix 28	AD1	B	28	41	Right-handed alpha
Helix 29	AD2	B	47	69	Right-handed alpha
Helix 30	AD3	B	74	89	Right-handed alpha
Helix 31	AD4	B	92	113	Right-handed alpha
Helix 32	AD5	B	114	118	Right-handed 310
Helix 33	AD6	B	140	161	Right-handed alpha
Helix 34	AD7	B	162	172	Right-handed alpha
Helix 35	AD8	B	194	202	Right-handed alpha
Helix 36	AD9	B	216	232	Right-handed alpha
Helix 37	AE1	B	242	266	Right-handed alpha
Helix 38	AE2	B	270	295	Right-handed alpha
Helix 39	AE3	B	316	333	Right-handed alpha
Helix 40	AE4	B	362	377	Right-handed alpha
Helix 41	AE5	B	383	391	Right-handed alpha
Helix 42	AE6	B	428	436	Right-handed alpha
Helix 43	AE7	B	439	466	Right-handed alpha
Helix 44	AE8	B	467	468	Right-handed 310
Helix 45	AE9	B	469	472	Right-handed 310
Helix 46	AF1	B	473	478	Right-handed alpha
Helix 47	AF2	B	491	496	Right-handed 310
Helix 48	AF3	B	509	519	Right-handed alpha
Helix 49	AF4	B	525	551	Right-handed alpha
Helix 50	AF5	B	564	577	Right-handed alpha
Helix 51	AF6	B	601	610	Right-handed alpha
Helix 52	AF7	B	610	616	Right-handed alpha
Helix 53	AF8	B	634	648	Right-handed alpha
Helix 54	AF9	B	708	717	Right-handed alpha

There are 13 sheets in PDB entry 9DAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	421	427	anti-parallel
Strand 3	A	502	507	parallel
Strand 4	A	553	558	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	307	310	parallel
Strand 3	A	345	347	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	650	654	anti-parallel
Strand 3	A	623	626	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	690	first strand
Strand 2	A	658	660	anti-parallel
Strand 3	A	665	667	anti-parallel
Strand 4	A	727	729	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	695	first strand
Strand 2	A	698	700	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	420	426	anti-parallel
Strand 3	B	190	192	anti-parallel
Strand 4	B	238	240	parallel
Strand 5	B	307	310	parallel
Strand 6	B	345	347	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	420	426	anti-parallel
Strand 3	B	502	507	parallel
Strand 4	B	553	558	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	650	654	anti-parallel
Strand 3	B	623	626	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	690	first strand
Strand 2	B	658	660	anti-parallel
Strand 3	B	665	667	anti-parallel
Strand 4	B	727	729	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	672	first strand
Strand 2	B	675	677	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	694	first strand
Strand 2	B	699	700	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DAU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DAU