Analysis of interatomic Contacts of Structural Units in PDB entry:
9DAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DAY entry

There are 2 chains in PDB entry 9DAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -8GLU 228
B
 PHE -1GLU 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9DAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
16 19Right-handed 310
Helix 3
AA3
A
22 31Right-handed alpha
Helix 4
AA4
A
49 53Right-handed 310
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
116 126Right-handed alpha
Helix 7
AA7
A
126 152Right-handed alpha
Helix 8
AA8
A
155 169Right-handed alpha
Helix 9
AA9
A
181 190Right-handed alpha
Helix 10
AB1
A
192 206Right-handed alpha
Helix 11
AB2
A
220 226Right-handed alpha
Helix 12
AB3
B
4 15Right-handed alpha
Helix 13
AB4
B
22 32Right-handed alpha
Helix 14
AB5
B
116 126Right-handed alpha
Helix 15
AB6
B
126 169Right-handed alpha
Helix 16
AB7
B
181 190Right-handed alpha
Helix 17
AB8
B
193 206Right-handed alpha
Helix 18
AB9
B
220 226Right-handed alpha
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There are 6 sheets in PDB entry 9DAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
109 115anti-parallel
Strand 3
A
55 61anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
63 69anti-parallel
Strand 4
A
75 82anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
215 218anti-parallel
Strand 3
A
209 212anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
109 115anti-parallel
Strand 3
B
55 61anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
103 105anti-parallel
Strand 3
B
64 69anti-parallel
Strand 4
B
75 81anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
215 218anti-parallel
Strand 3
B
209 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il