Analysis of interatomic Contacts of Structural Units in PDB entry:
9DAZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DAZ entry

There are 4 chains in PDB entry 9DAZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 64	SER 967
B	VAL 536	TYR 661
C	ASP 64	SER 967
D	VAL 536	TYR 661

There are 76 helices in PDB entry 9DAZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	71	Right-handed 310
Helix 2	AA2	A	275	279	Right-handed 310
Helix 3	AA3	A	304	311	Right-handed alpha
Helix 4	AA4	A	313	332	Right-handed alpha
Helix 5	AA5	A	363	367	Right-handed alpha
Helix 6	AA6	A	374	391	Right-handed alpha
Helix 7	AA7	A	402	404	Right-handed 310
Helix 8	AA8	A	405	425	Right-handed alpha
Helix 9	AA9	A	426	431	Right-handed 310
Helix 10	AB1	A	432	438	Right-handed alpha
Helix 11	AB2	A	438	447	Right-handed alpha
Helix 12	AB3	A	457	461	Right-handed 310
Helix 13	AB4	A	463	470	Right-handed alpha
Helix 14	AB5	A	472	490	Right-handed alpha
Helix 15	AB6	A	491	506	Right-handed alpha
Helix 16	AB7	A	512	526	Right-handed alpha
Helix 17	AB8	A	535	545	Right-handed alpha
Helix 18	AB9	A	611	614	Right-handed 310
Helix 19	AC1	A	624	628	Right-handed 310
Helix 20	AC2	A	636	650	Right-handed alpha
Helix 21	AC3	A	651	654	Right-handed 310
Helix 22	AC4	A	655	672	Right-handed alpha
Helix 23	AC5	A	676	683	Right-handed alpha
Helix 24	AC6	A	684	690	Right-handed 310
Helix 25	AC7	A	692	711	Right-handed alpha
Helix 26	AC8	A	715	738	Right-handed alpha
Helix 27	AC9	A	747	764	Right-handed alpha
Helix 28	AD1	A	766	783	Right-handed alpha
Helix 29	AD2	A	793	805	Right-handed alpha
Helix 30	AD3	A	806	819	Right-handed alpha
Helix 31	AD4	A	823	833	Right-handed alpha
Helix 32	AD5	A	838	849	Right-handed alpha
Helix 33	AD6	A	856	870	Right-handed alpha
Helix 34	AD7	A	872	884	Right-handed alpha
Helix 35	AD8	A	884	893	Right-handed alpha
Helix 36	AD9	A	897	906	Right-handed alpha
Helix 37	AE1	A	912	926	Right-handed alpha
Helix 38	AE2	A	933	967	Right-handed alpha
Helix 39	AE3	C	67	71	Right-handed 310
Helix 40	AE4	C	275	279	Right-handed 310
Helix 41	AE5	C	304	311	Right-handed alpha
Helix 42	AE6	C	313	332	Right-handed alpha
Helix 43	AE7	C	363	367	Right-handed alpha
Helix 44	AE8	C	374	391	Right-handed alpha
Helix 45	AE9	C	402	404	Right-handed 310
Helix 46	AF1	C	405	425	Right-handed alpha
Helix 47	AF2	C	426	431	Right-handed 310
Helix 48	AF3	C	432	438	Right-handed alpha
Helix 49	AF4	C	438	447	Right-handed alpha
Helix 50	AF5	C	457	461	Right-handed 310
Helix 51	AF6	C	463	470	Right-handed alpha
Helix 52	AF7	C	472	490	Right-handed alpha
Helix 53	AF8	C	491	506	Right-handed alpha
Helix 54	AF9	C	512	526	Right-handed alpha
Helix 55	AG1	C	535	545	Right-handed alpha
Helix 56	AG2	C	611	614	Right-handed 310
Helix 57	AG3	C	624	628	Right-handed 310
Helix 58	AG4	C	636	650	Right-handed alpha
Helix 59	AG5	C	651	654	Right-handed 310
Helix 60	AG6	C	655	672	Right-handed alpha
Helix 61	AG7	C	676	683	Right-handed alpha
Helix 62	AG8	C	684	690	Right-handed 310
Helix 63	AG9	C	692	711	Right-handed alpha
Helix 64	AH1	C	715	738	Right-handed alpha
Helix 65	AH2	C	747	764	Right-handed alpha
Helix 66	AH3	C	766	783	Right-handed alpha
Helix 67	AH4	C	793	805	Right-handed alpha
Helix 68	AH5	C	806	819	Right-handed alpha
Helix 69	AH6	C	823	833	Right-handed alpha
Helix 70	AH7	C	838	849	Right-handed alpha
Helix 71	AH8	C	856	870	Right-handed alpha
Helix 72	AH9	C	872	884	Right-handed alpha
Helix 73	AI1	C	884	893	Right-handed alpha
Helix 74	AI2	C	897	906	Right-handed alpha
Helix 75	AI3	C	912	926	Right-handed alpha
Helix 76	AI4	C	933	967	Right-handed alpha

There are 26 sheets in PDB entry 9DAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	174	184	anti-parallel
Strand 3	A	136	139	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	174	184	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	78	90	anti-parallel
Strand 5	A	231	239	parallel
Strand 6	A	263	267	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	149	155	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	199	first strand
Strand 2	A	202	210	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	282	284	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	292	first strand
Strand 2	A	298	303	anti-parallel
Strand 3	A	339	345	parallel
Strand 4	A	358	362	parallel
Strand 5	A	352	353	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	509	511	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	609	first strand
Strand 2	A	560	565	anti-parallel
Strand 3	A	550	555	anti-parallel
Strand 4	A	632	634	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	588	first strand
Strand 2	A	600	603	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	596	first strand
Strand 2	A	591	592	anti-parallel
Strand 3	A	621	622	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	554	first strand
Strand 2	B	538	546	anti-parallel
Strand 3	B	559	561	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	554	first strand
Strand 2	B	538	546	anti-parallel
Strand 3	B	583	589	parallel
Strand 4	B	598	599	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	609	first strand
Strand 2	B	645	649	anti-parallel
Strand 3	B	654	659	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	174	184	anti-parallel
Strand 3	C	136	139	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	174	184	anti-parallel
Strand 3	C	100	111	anti-parallel
Strand 4	C	78	90	anti-parallel
Strand 5	C	231	239	parallel
Strand 6	C	263	267	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	121	first strand
Strand 2	C	160	165	anti-parallel
Strand 3	C	149	155	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	199	first strand
Strand 2	C	202	210	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	282	284	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	292	first strand
Strand 2	C	298	303	anti-parallel
Strand 3	C	339	345	parallel
Strand 4	C	358	362	parallel
Strand 5	C	352	353	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	400	first strand
Strand 2	C	509	511	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	609	first strand
Strand 2	C	560	565	anti-parallel
Strand 3	C	550	555	anti-parallel
Strand 4	C	632	634	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	588	first strand
Strand 2	C	600	603	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	591	592	anti-parallel
Strand 3	C	621	622	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	554	first strand
Strand 2	D	538	546	anti-parallel
Strand 3	D	559	561	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	554	first strand
Strand 2	D	538	546	anti-parallel
Strand 3	D	583	589	parallel
Strand 4	D	598	599	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	607	609	first strand
Strand 2	D	645	649	anti-parallel
Strand 3	D	654	659	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DAZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DAZ