Analysis of interatomic Contacts of Structural Units in PDB entry:
9DB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DB0 entry

There are 3 chains in PDB entry 9DB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 265	GLY 1307
B	THR 265	GLY 1307
C	THR 265	GLY 1307

There are 63 helices in PDB entry 9DB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	491	500	Right-handed alpha
Helix 2	AA2	A	618	622	Right-handed 310
Helix 3	AA3	A	865	871	Right-handed alpha
Helix 4	AA4	A	874	882	Right-handed alpha
Helix 5	AA5	A	884	908	Right-handed alpha
Helix 6	AA6	A	913	920	Right-handed alpha
Helix 7	AA7	A	921	926	Right-handed alpha
Helix 8	AA8	A	932	936	Right-handed 310
Helix 9	AA9	A	942	944	Right-handed 310
Helix 10	AB1	A	945	950	Right-handed alpha
Helix 11	AB2	A	964	974	Right-handed alpha
Helix 12	AB3	A	997	1005	Right-handed alpha
Helix 13	AB4	A	1012	1029	Right-handed alpha
Helix 14	AB5	A	1030	1032	Right-handed 310
Helix 15	AB6	A	1043	1056	Right-handed alpha
Helix 16	AB7	A	1065	1085	Right-handed alpha
Helix 17	AB8	A	1099	1125	Right-handed alpha
Helix 18	AB9	A	1126	1128	Right-handed 310
Helix 19	AC1	A	1136	1142	Right-handed alpha
Helix 20	AC2	A	1145	1193	Right-handed alpha
Helix 21	AC3	A	1283	1285	Right-handed 310
Helix 22	AC4	B	491	500	Right-handed alpha
Helix 23	AC5	B	618	622	Right-handed 310
Helix 24	AC6	B	865	871	Right-handed alpha
Helix 25	AC7	B	874	882	Right-handed alpha
Helix 26	AC8	B	884	908	Right-handed alpha
Helix 27	AC9	B	913	920	Right-handed alpha
Helix 28	AD1	B	921	926	Right-handed alpha
Helix 29	AD2	B	932	936	Right-handed 310
Helix 30	AD3	B	942	944	Right-handed 310
Helix 31	AD4	B	945	950	Right-handed alpha
Helix 32	AD5	B	964	974	Right-handed alpha
Helix 33	AD6	B	997	1005	Right-handed alpha
Helix 34	AD7	B	1012	1029	Right-handed alpha
Helix 35	AD8	B	1030	1032	Right-handed 310
Helix 36	AD9	B	1043	1056	Right-handed alpha
Helix 37	AE1	B	1065	1085	Right-handed alpha
Helix 38	AE2	B	1099	1125	Right-handed alpha
Helix 39	AE3	B	1126	1128	Right-handed 310
Helix 40	AE4	B	1136	1142	Right-handed alpha
Helix 41	AE5	B	1145	1193	Right-handed alpha
Helix 42	AE6	B	1283	1285	Right-handed 310
Helix 43	AE7	C	491	500	Right-handed alpha
Helix 44	AE8	C	618	622	Right-handed 310
Helix 45	AE9	C	865	871	Right-handed alpha
Helix 46	AF1	C	874	882	Right-handed alpha
Helix 47	AF2	C	884	908	Right-handed alpha
Helix 48	AF3	C	913	920	Right-handed alpha
Helix 49	AF4	C	921	926	Right-handed alpha
Helix 50	AF5	C	932	936	Right-handed 310
Helix 51	AF6	C	942	944	Right-handed 310
Helix 52	AF7	C	945	950	Right-handed alpha
Helix 53	AF8	C	964	974	Right-handed alpha
Helix 54	AF9	C	997	1005	Right-handed alpha
Helix 55	AG1	C	1012	1029	Right-handed alpha
Helix 56	AG2	C	1030	1032	Right-handed 310
Helix 57	AG3	C	1043	1056	Right-handed alpha
Helix 58	AG4	C	1065	1085	Right-handed alpha
Helix 59	AG5	C	1099	1125	Right-handed alpha
Helix 60	AG6	C	1126	1128	Right-handed 310
Helix 61	AG7	C	1136	1142	Right-handed alpha
Helix 62	AG8	C	1145	1193	Right-handed alpha
Helix 63	AG9	C	1283	1285	Right-handed 310

There are 42 sheets in PDB entry 9DB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	314	first strand
Strand 2	A	463	479	anti-parallel
Strand 3	A	344	348	anti-parallel
Strand 4	A	427	430	anti-parallel
Strand 5	A	434	437	anti-parallel
Strand 6	A	440	444	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	314	first strand
Strand 2	A	463	479	anti-parallel
Strand 3	A	482	488	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	324	first strand
Strand 2	A	448	457	anti-parallel
Strand 3	A	355	357	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	324	first strand
Strand 2	A	448	457	anti-parallel
Strand 3	A	362	368	anti-parallel
Strand 4	A	373	379	anti-parallel
Strand 5	A	404	408	anti-parallel
Strand 6	A	413	419	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	513	first strand
Strand 2	A	745	751	anti-parallel
Strand 3	A	754	760	anti-parallel
Strand 4	A	779	782	anti-parallel
Strand 5	A	771	774	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	525	first strand
Strand 2	A	691	696	parallel
Strand 3	A	699	707	anti-parallel
Strand 4	A	736	740	anti-parallel
Strand 5	A	725	729	anti-parallel
Strand 6	A	717	719	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	554	first strand
Strand 2	A	533	546	anti-parallel
Strand 3	A	578	589	parallel
Strand 4	A	654	672	parallel
Strand 5	A	627	634	anti-parallel
Strand 6	A	571	573	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	A	533	546	anti-parallel
Strand 3	A	578	589	parallel
Strand 4	A	654	672	parallel
Strand 5	A	642	649	anti-parallel
Strand 6	A	607	611	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	809	first strand
Strand 2	A	812	815	anti-parallel
Strand 3	A	820	822	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	827	first strand
Strand 2	B	911	912	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	843	first strand
Strand 2	A	1232	1238	anti-parallel
Strand 3	A	1259	1263	anti-parallel
Strand 4	A	1269	1273	anti-parallel
Strand 5	A	1280	1281	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	856	first strand
Strand 2	A	1219	1229	anti-parallel
Strand 3	A	1207	1216	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	862	864	first strand
Strand 2	A	1007	1009	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	912	first strand
Strand 2	C	826	827	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1287	1290	first strand
Strand 2	A	1249	1254	anti-parallel
Strand 3	A	1241	1244	anti-parallel
Strand 4	A	1298	1301	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	314	first strand
Strand 2	B	463	479	anti-parallel
Strand 3	B	344	348	anti-parallel
Strand 4	B	427	430	anti-parallel
Strand 5	B	434	437	anti-parallel
Strand 6	B	440	444	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	314	first strand
Strand 2	B	463	479	anti-parallel
Strand 3	B	482	488	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	324	first strand
Strand 2	B	448	457	anti-parallel
Strand 3	B	355	357	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	324	first strand
Strand 2	B	448	457	anti-parallel
Strand 3	B	362	368	anti-parallel
Strand 4	B	373	379	anti-parallel
Strand 5	B	404	408	anti-parallel
Strand 6	B	413	419	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	513	first strand
Strand 2	B	745	751	anti-parallel
Strand 3	B	754	760	anti-parallel
Strand 4	B	779	782	anti-parallel
Strand 5	B	771	774	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	525	first strand
Strand 2	B	691	696	parallel
Strand 3	B	699	707	anti-parallel
Strand 4	B	736	740	anti-parallel
Strand 5	B	725	729	anti-parallel
Strand 6	B	717	719	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	554	first strand
Strand 2	B	533	546	anti-parallel
Strand 3	B	578	589	parallel
Strand 4	B	654	672	parallel
Strand 5	B	627	634	anti-parallel
Strand 6	B	571	573	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	561	first strand
Strand 2	B	533	546	anti-parallel
Strand 3	B	578	589	parallel
Strand 4	B	654	672	parallel
Strand 5	B	642	649	anti-parallel
Strand 6	B	607	611	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	809	first strand
Strand 2	B	812	815	anti-parallel
Strand 3	B	820	822	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	827	first strand
Strand 2	C	911	912	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	838	843	first strand
Strand 2	B	1232	1238	anti-parallel
Strand 3	B	1259	1263	anti-parallel
Strand 4	B	1269	1273	anti-parallel
Strand 5	B	1280	1281	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	856	first strand
Strand 2	B	1219	1229	anti-parallel
Strand 3	B	1207	1216	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	862	864	first strand
Strand 2	B	1007	1009	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1287	1290	first strand
Strand 2	B	1249	1254	anti-parallel
Strand 3	B	1241	1244	anti-parallel
Strand 4	B	1298	1301	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	314	first strand
Strand 2	C	463	479	anti-parallel
Strand 3	C	344	348	anti-parallel
Strand 4	C	427	430	anti-parallel
Strand 5	C	434	437	anti-parallel
Strand 6	C	440	444	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	314	first strand
Strand 2	C	463	479	anti-parallel
Strand 3	C	482	488	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	324	first strand
Strand 2	C	448	457	anti-parallel
Strand 3	C	355	357	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	324	first strand
Strand 2	C	448	457	anti-parallel
Strand 3	C	362	368	anti-parallel
Strand 4	C	373	379	anti-parallel
Strand 5	C	404	408	anti-parallel
Strand 6	C	413	419	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	513	first strand
Strand 2	C	745	751	anti-parallel
Strand 3	C	754	760	anti-parallel
Strand 4	C	779	782	anti-parallel
Strand 5	C	771	774	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	525	first strand
Strand 2	C	691	696	parallel
Strand 3	C	699	707	anti-parallel
Strand 4	C	736	740	anti-parallel
Strand 5	C	725	729	anti-parallel
Strand 6	C	717	719	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	552	554	first strand
Strand 2	C	533	546	anti-parallel
Strand 3	C	578	589	parallel
Strand 4	C	654	672	parallel
Strand 5	C	627	634	anti-parallel
Strand 6	C	571	573	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	561	first strand
Strand 2	C	533	546	anti-parallel
Strand 3	C	578	589	parallel
Strand 4	C	654	672	parallel
Strand 5	C	642	649	anti-parallel
Strand 6	C	607	611	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	805	809	first strand
Strand 2	C	812	815	anti-parallel
Strand 3	C	820	822	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	838	843	first strand
Strand 2	C	1232	1238	anti-parallel
Strand 3	C	1259	1263	anti-parallel
Strand 4	C	1269	1273	anti-parallel
Strand 5	C	1280	1281	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	856	first strand
Strand 2	C	1219	1229	anti-parallel
Strand 3	C	1207	1216	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	862	864	first strand
Strand 2	C	1007	1009	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1287	1290	first strand
Strand 2	C	1249	1254	anti-parallel
Strand 3	C	1241	1244	anti-parallel
Strand 4	C	1298	1301	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DB0