Analysis of interatomic Contacts of Structural Units in PDB entry:
9DB6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DB6 entry

There are 4 chains in PDB entry 9DB6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	LYS 529
B	ASP 9	LYS 529
C	ASP 9	LYS 529
D	ASP 9	LYS 529

There are 40 helices in PDB entry 9DB6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	56	Right-handed 310
Helix 2	AA2	A	72	77	Right-handed 310
Helix 3	AA3	A	181	185	Right-handed 310
Helix 4	AA4	A	244	248	Right-handed 310
Helix 5	AA5	A	249	253	Right-handed 310
Helix 6	AA6	A	283	288	Right-handed alpha
Helix 7	AA7	A	318	323	Right-handed alpha
Helix 8	AA8	A	442	446	Right-handed 310
Helix 9	AA9	A	480	482	Right-handed 310
Helix 10	AB1	A	524	528	Right-handed alpha
Helix 11	AB2	B	54	56	Right-handed 310
Helix 12	AB3	B	70	77	Right-handed 310
Helix 13	AB4	B	181	185	Right-handed 310
Helix 14	AB5	B	244	248	Right-handed 310
Helix 15	AB6	B	249	253	Right-handed 310
Helix 16	AB7	B	283	288	Right-handed alpha
Helix 17	AB8	B	318	323	Right-handed alpha
Helix 18	AB9	B	442	446	Right-handed 310
Helix 19	AC1	B	480	482	Right-handed 310
Helix 20	AC2	B	524	528	Right-handed alpha
Helix 21	AC3	C	54	56	Right-handed 310
Helix 22	AC4	C	70	77	Right-handed 310
Helix 23	AC5	C	181	185	Right-handed 310
Helix 24	AC6	C	244	248	Right-handed 310
Helix 25	AC7	C	249	253	Right-handed 310
Helix 26	AC8	C	283	288	Right-handed alpha
Helix 27	AC9	C	318	323	Right-handed alpha
Helix 28	AD1	C	442	446	Right-handed 310
Helix 29	AD2	C	480	482	Right-handed 310
Helix 30	AD3	C	524	528	Right-handed alpha
Helix 31	AD4	D	54	56	Right-handed 310
Helix 32	AD5	D	70	77	Right-handed 310
Helix 33	AD6	D	181	185	Right-handed 310
Helix 34	AD7	D	244	248	Right-handed 310
Helix 35	AD8	D	249	253	Right-handed 310
Helix 36	AD9	D	283	288	Right-handed alpha
Helix 37	AE1	D	318	323	Right-handed alpha
Helix 38	AE2	D	442	446	Right-handed 310
Helix 39	AE3	D	480	482	Right-handed 310
Helix 40	AE4	D	524	528	Right-handed alpha

There are 41 sheets in PDB entry 9DB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	108	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	127	135	anti-parallel
Strand 4	A	28	34	anti-parallel
Strand 5	A	10	15	anti-parallel
Strand 6	A	160	163	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	171	178	parallel
Strand 3	A	144	145	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	171	178	parallel
Strand 3	A	517	523	anti-parallel
Strand 4	A	505	510	anti-parallel
Strand 5	A	496	502	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	121	first strand
Strand 2	A	41	49	anti-parallel
Strand 3	A	147	154	anti-parallel
Strand 4	A	157	158	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	195	first strand
Strand 2	A	201	208	anti-parallel
Strand 3	A	219	226	anti-parallel
Strand 4	A	237	240	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	299	305	anti-parallel
Strand 3	A	269	275	anti-parallel
Strand 4	A	255	262	anti-parallel
Strand 5	A	335	336	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	332	first strand
Strand 2	A	345	352	anti-parallel
Strand 3	A	358	365	anti-parallel
Strand 4	A	373	374	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	345	352	anti-parallel
Strand 3	A	358	365	anti-parallel
Strand 4	A	379	380	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	391	first strand
Strand 2	A	394	401	anti-parallel
Strand 3	A	408	412	anti-parallel
Strand 4	A	420	421	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	441	first strand
Strand 2	A	452	458	anti-parallel
Strand 3	A	467	472	anti-parallel
Strand 4	A	484	488	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	108	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	127	135	anti-parallel
Strand 4	B	28	34	anti-parallel
Strand 5	B	10	15	anti-parallel
Strand 6	B	160	163	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	171	178	parallel
Strand 3	B	144	145	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	171	178	parallel
Strand 3	B	517	523	anti-parallel
Strand 4	B	505	510	anti-parallel
Strand 5	B	496	502	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	121	first strand
Strand 2	B	41	49	anti-parallel
Strand 3	B	147	154	anti-parallel
Strand 4	B	157	158	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	195	first strand
Strand 2	B	201	208	anti-parallel
Strand 3	B	219	226	anti-parallel
Strand 4	B	237	240	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	299	305	anti-parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	255	262	anti-parallel
Strand 5	B	335	336	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	345	352	anti-parallel
Strand 3	B	338	339	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	345	352	anti-parallel
Strand 3	B	358	365	anti-parallel
Strand 4	B	379	380	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	391	first strand
Strand 2	B	394	401	anti-parallel
Strand 3	B	408	412	anti-parallel
Strand 4	B	420	421	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	452	458	anti-parallel
Strand 3	B	467	472	anti-parallel
Strand 4	B	484	488	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	108	first strand
Strand 2	C	58	67	anti-parallel
Strand 3	C	127	135	anti-parallel
Strand 4	C	28	34	anti-parallel
Strand 5	C	10	15	anti-parallel
Strand 6	C	160	163	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	171	178	parallel
Strand 3	C	144	145	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	171	178	parallel
Strand 3	C	517	523	anti-parallel
Strand 4	C	505	510	anti-parallel
Strand 5	C	496	502	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	121	first strand
Strand 2	C	41	49	anti-parallel
Strand 3	C	147	154	anti-parallel
Strand 4	C	157	158	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	195	first strand
Strand 2	C	201	208	anti-parallel
Strand 3	C	219	226	anti-parallel
Strand 4	C	237	240	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	317	first strand
Strand 2	C	299	305	anti-parallel
Strand 3	C	269	275	anti-parallel
Strand 4	C	255	262	anti-parallel
Strand 5	C	335	336	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	332	first strand
Strand 2	C	345	352	anti-parallel
Strand 3	C	358	365	anti-parallel
Strand 4	C	373	374	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	345	352	anti-parallel
Strand 3	C	358	365	anti-parallel
Strand 4	C	379	380	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	391	first strand
Strand 2	C	394	401	anti-parallel
Strand 3	C	408	412	anti-parallel
Strand 4	C	420	421	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	441	first strand
Strand 2	C	452	458	anti-parallel
Strand 3	C	467	472	anti-parallel
Strand 4	C	484	488	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	108	first strand
Strand 2	D	58	67	anti-parallel
Strand 3	D	127	135	anti-parallel
Strand 4	D	28	34	anti-parallel
Strand 5	D	10	15	anti-parallel
Strand 6	D	160	163	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	171	178	parallel
Strand 3	D	144	145	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	171	178	parallel
Strand 3	D	517	523	anti-parallel
Strand 4	D	505	510	anti-parallel
Strand 5	D	496	502	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	121	first strand
Strand 2	D	41	49	anti-parallel
Strand 3	D	147	154	anti-parallel
Strand 4	D	157	158	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	195	first strand
Strand 2	D	201	208	anti-parallel
Strand 3	D	219	226	anti-parallel
Strand 4	D	237	240	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	299	305	anti-parallel
Strand 3	D	269	275	anti-parallel
Strand 4	D	255	262	anti-parallel
Strand 5	D	335	336	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	332	first strand
Strand 2	D	345	352	anti-parallel
Strand 3	D	358	365	anti-parallel
Strand 4	D	373	374	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	345	352	anti-parallel
Strand 3	D	358	365	anti-parallel
Strand 4	D	379	380	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	391	first strand
Strand 2	D	394	401	anti-parallel
Strand 3	D	408	412	anti-parallel
Strand 4	D	420	421	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	430	431	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	441	first strand
Strand 2	D	452	458	anti-parallel
Strand 3	D	467	472	anti-parallel
Strand 4	D	484	488	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DB6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DB6