Analysis of interatomic Contacts of Structural Units in PDB entry:
9DBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DBH entry

There are 8 chains in PDB entry 9DBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 217
B
 ILE 2LYS 217
C
 SER 1LYS 217
D
 ILE 2GLY 215
E
 A 1 A 6
F
 A 1 A 5
G
 A 1 A 4
H
 A 1 A 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9DBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
59 69Right-handed alpha
Helix 4
AA4
A
77 86Right-handed alpha
Helix 5
AA5
A
92 110Right-handed alpha
Helix 6
AA6
A
115 138Right-handed alpha
Helix 7
AA7
A
144 152Right-handed alpha
Helix 8
AA8
A
156 162Right-handed alpha
Helix 9
AA9
A
163 166Right-handed 310
Helix 10
AB1
A
171 184Right-handed alpha
Helix 11
AB2
A
195 204Right-handed alpha
Helix 12
AB3
A
206 216Right-handed alpha
Helix 13
AB4
B
9 13Right-handed alpha
Helix 14
AB5
B
47 57Right-handed alpha
Helix 15
AB6
B
59 69Right-handed alpha
Helix 16
AB7
B
77 86Right-handed alpha
Helix 17
AB8
B
92 110Right-handed alpha
Helix 18
AB9
B
115 138Right-handed alpha
Helix 19
AC1
B
144 152Right-handed alpha
Helix 20
AC2
B
156 162Right-handed alpha
Helix 21
AC3
B
163 166Right-handed 310
Helix 22
AC4
B
171 184Right-handed alpha
Helix 23
AC5
B
193 204Right-handed alpha
Helix 24
AC6
B
206 216Right-handed alpha
Helix 25
AC7
C
9 14Right-handed alpha
Helix 26
AC8
C
47 57Right-handed alpha
Helix 27
AC9
C
59 69Right-handed alpha
Helix 28
AD1
C
77 86Right-handed alpha
Helix 29
AD2
C
92 110Right-handed alpha
Helix 30
AD3
C
115 138Right-handed alpha
Helix 31
AD4
C
144 152Right-handed alpha
Helix 32
AD5
C
156 162Right-handed alpha
Helix 33
AD6
C
171 184Right-handed alpha
Helix 34
AD7
C
193 204Right-handed alpha
Helix 35
AD8
C
206 217Right-handed alpha
Helix 36
AD9
D
9 13Right-handed 310
Helix 37
AE1
D
47 57Right-handed alpha
Helix 38
AE2
D
59 69Right-handed alpha
Helix 39
AE3
D
77 86Right-handed alpha
Helix 40
AE4
D
92 110Right-handed alpha
Helix 41
AE5
D
116 138Right-handed alpha
Helix 42
AE6
D
144 152Right-handed alpha
Helix 43
AE7
D
156 162Right-handed alpha
Helix 44
AE8
D
173 184Right-handed alpha
Helix 45
AE9
D
193 204Right-handed alpha
Helix 46
AF1
D
206 214Right-handed alpha
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There are 4 sheets in PDB entry 9DBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
22 28parallel
Strand 4
A
2 8anti-parallel
Strand 5
A
70 74anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
41 46anti-parallel
Strand 3
B
22 27parallel
Strand 4
B
4 8anti-parallel
Strand 5
B
70 74anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 37first strand
Strand 2
C
41 46anti-parallel
Strand 3
C
22 28parallel
Strand 4
C
2 8anti-parallel
Strand 5
C
70 74anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 46first strand
Strand 2
D
22 27parallel
Strand 3
D
4 8anti-parallel
Strand 4
D
70 74anti-parallel
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