Analysis of interatomic Contacts of Structural Units in PDB entry:
9DBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DBK entry

There is 1 chain in PDB entry 9DBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 232ASN 1726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9DBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
232 268Right-handed alpha
Helix 2
AA2
A
331 336Right-handed alpha
Helix 3
AA3
A
341 355Right-handed alpha
Helix 4
AA4
A
357 369Right-handed alpha
Helix 5
AA5
A
370 372Right-handed 310
Helix 6
AA6
A
373 383Right-handed alpha
Helix 7
AA7
A
384 407Right-handed alpha
Helix 8
AA8
A
652 660Right-handed alpha
Helix 9
AA9
A
664 683Right-handed alpha
Helix 10
AB1
A
690 719Right-handed alpha
Helix 11
AB2
A
727 746Right-handed alpha
Helix 12
AB3
A
754 759Right-handed alpha
Helix 13
AB4
A
760 768Right-handed 310
Helix 14
AB5
A
770 785Right-handed alpha
Helix 15
AB6
A
787 816Right-handed alpha
Helix 16
AB7
A
816 821Right-handed alpha
Helix 17
AB8
A
834 848Right-handed alpha
Helix 18
AB9
A
850 860Right-handed alpha
Helix 19
AC1
A
862 894Right-handed alpha
Helix 20
AC2
A
1137 1151Right-handed alpha
Helix 21
AC3
A
1151 1168Right-handed alpha
Helix 22
AC4
A
1169 1172Right-handed 310
Helix 23
AC5
A
1173 1178Right-handed 310
Helix 24
AC6
A
1179 1208Right-handed alpha
Helix 25
AC7
A
1209 1214Right-handed alpha
Helix 26
AC8
A
1216 1238Right-handed alpha
Helix 27
AC9
A
1243 1252Right-handed alpha
Helix 28
AD1
A
1253 1258Right-handed 310
Helix 29
AD2
A
1259 1264Right-handed alpha
Helix 30
AD3
A
1264 1276Right-handed alpha
Helix 31
AD4
A
1277 1303Right-handed alpha
Helix 32
AD5
A
1328 1335Right-handed alpha
Helix 33
AD6
A
1352 1365Right-handed alpha
Helix 34
AD7
A
1368 1378Right-handed alpha
Helix 35
AD8
A
1394 1429Right-handed alpha
Helix 36
AD9
A
1436 1451Right-handed alpha
Helix 37
AE1
A
1463 1475Right-handed alpha
Helix 38
AE2
A
1477 1496Right-handed alpha
Helix 39
AE3
A
1501 1531Right-handed alpha
Helix 40
AE4
A
1532 1535Right-handed 310
Helix 41
AE5
A
1539 1561Right-handed alpha
Helix 42
AE6
A
1568 1576Right-handed alpha
Helix 43
AE7
A
1577 1579Right-handed 310
Helix 44
AE8
A
1580 1585Right-handed alpha
Helix 45
AE9
A
1586 1590Right-handed 310
Helix 46
AF1
A
1592 1629Right-handed alpha
Helix 47
AF2
A
1639 1643Right-handed 310
Helix 48
AF3
A
1646 1659Right-handed alpha
Helix 49
AF4
A
1662 1672Right-handed alpha
Helix 50
AF5
A
1694 1726Right-handed alpha
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There are 2 sheets in PDB entry 9DBK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
323 326anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1309 1312first strand
Strand 2
A
1341 1344anti-parallel
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