Analysis of interatomic Contacts of Structural Units in PDB entry:
9DBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DBM entry

There is 1 chain in PDB entry 9DBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 232ASN 1726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 9DBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
232 241Right-handed alpha
Helix 2
AA2
A
246 268Right-handed alpha
Helix 3
AA3
A
341 354Right-handed alpha
Helix 4
AA4
A
357 369Right-handed alpha
Helix 5
AA5
A
370 372Right-handed 310
Helix 6
AA6
A
373 383Right-handed alpha
Helix 7
AA7
A
384 407Right-handed alpha
Helix 8
AA8
A
652 660Right-handed alpha
Helix 9
AA9
A
664 683Right-handed alpha
Helix 10
AB1
A
690 719Right-handed alpha
Helix 11
AB2
A
727 743Right-handed alpha
Helix 12
AB3
A
744 746Right-handed 310
Helix 13
AB4
A
758 768Right-handed 310
Helix 14
AB5
A
770 785Right-handed alpha
Helix 15
AB6
A
787 816Right-handed alpha
Helix 16
AB7
A
816 821Right-handed alpha
Helix 17
AB8
A
834 847Right-handed alpha
Helix 18
AB9
A
850 859Right-handed alpha
Helix 19
AC1
A
862 892Right-handed alpha
Helix 20
AC2
A
1137 1150Right-handed alpha
Helix 21
AC3
A
1151 1168Right-handed alpha
Helix 22
AC4
A
1169 1172Right-handed 310
Helix 23
AC5
A
1173 1178Right-handed 310
Helix 24
AC6
A
1179 1209Right-handed alpha
Helix 25
AC7
A
1209 1216Right-handed alpha
Helix 26
AC8
A
1218 1238Right-handed alpha
Helix 27
AC9
A
1243 1252Right-handed alpha
Helix 28
AD1
A
1253 1261Right-handed 310
Helix 29
AD2
A
1264 1276Right-handed alpha
Helix 30
AD3
A
1277 1303Right-handed alpha
Helix 31
AD4
A
1328 1335Right-handed alpha
Helix 32
AD5
A
1336 1339Right-handed 310
Helix 33
AD6
A
1352 1366Right-handed alpha
Helix 34
AD7
A
1370 1379Right-handed alpha
Helix 35
AD8
A
1391 1393Right-handed 310
Helix 36
AD9
A
1394 1406Right-handed alpha
Helix 37
AE1
A
1409 1421Right-handed alpha
Helix 38
AE2
A
1421 1429Right-handed alpha
Helix 39
AE3
A
1436 1453Right-handed alpha
Helix 40
AE4
A
1463 1474Right-handed alpha
Helix 41
AE5
A
1477 1495Right-handed alpha
Helix 42
AE6
A
1501 1512Right-handed alpha
Helix 43
AE7
A
1513 1529Right-handed alpha
Helix 44
AE8
A
1533 1536Right-handed 310
Helix 45
AE9
A
1537 1561Right-handed alpha
Helix 46
AF1
A
1568 1576Right-handed alpha
Helix 47
AF2
A
1577 1584Right-handed alpha
Helix 48
AF3
A
1585 1587Right-handed 310
Helix 49
AF4
A
1592 1629Right-handed alpha
Helix 50
AF5
A
1646 1659Right-handed alpha
Helix 51
AF6
A
1662 1672Right-handed alpha
Helix 52
AF7
A
1694 1726Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9DBM.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1319 1320first strand
Strand 2
A
1309 1312anti-parallel
Strand 3
A
1341 1344anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il