Analysis of interatomic Contacts of Structural Units in PDB entry:
9DBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DBN entry

There are 2 chains in PDB entry 9DBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 232ASN 1726
B
 GLU 1SER 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9DBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
232 246Right-handed alpha
Helix 2
AA2
A
246 268Right-handed alpha
Helix 3
AA3
A
270 272Right-handed 310
Helix 4
AA4
A
331 336Right-handed alpha
Helix 5
AA5
A
341 355Right-handed alpha
Helix 6
AA6
A
357 369Right-handed alpha
Helix 7
AA7
A
370 372Right-handed 310
Helix 8
AA8
A
373 383Right-handed alpha
Helix 9
AA9
A
384 407Right-handed alpha
Helix 10
AB1
A
653 659Right-handed alpha
Helix 11
AB2
A
666 683Right-handed alpha
Helix 12
AB3
A
690 719Right-handed alpha
Helix 13
AB4
A
720 726Right-handed alpha
Helix 14
AB5
A
727 744Right-handed alpha
Helix 15
AB6
A
752 757Right-handed alpha
Helix 16
AB7
A
758 768Right-handed 310
Helix 17
AB8
A
770 785Right-handed alpha
Helix 18
AB9
A
787 816Right-handed alpha
Helix 19
AC1
A
816 821Right-handed alpha
Helix 20
AC2
A
835 848Right-handed alpha
Helix 21
AC3
A
850 861Right-handed alpha
Helix 22
AC4
A
862 892Right-handed alpha
Helix 23
AC5
A
1137 1150Right-handed alpha
Helix 24
AC6
A
1155 1170Right-handed alpha
Helix 25
AC7
A
1173 1177Right-handed 310
Helix 26
AC8
A
1179 1208Right-handed alpha
Helix 27
AC9
A
1209 1215Right-handed alpha
Helix 28
AD1
A
1220 1238Right-handed alpha
Helix 29
AD2
A
1243 1252Right-handed alpha
Helix 30
AD3
A
1253 1257Right-handed 310
Helix 31
AD4
A
1258 1264Right-handed alpha
Helix 32
AD5
A
1264 1276Right-handed alpha
Helix 33
AD6
A
1277 1304Right-handed alpha
Helix 34
AD7
A
1328 1335Right-handed alpha
Helix 35
AD8
A
1352 1366Right-handed alpha
Helix 36
AD9
A
1368 1379Right-handed alpha
Helix 37
AE1
A
1393 1429Right-handed alpha
Helix 38
AE2
A
1436 1451Right-handed alpha
Helix 39
AE3
A
1463 1474Right-handed alpha
Helix 40
AE4
A
1475 1495Right-handed alpha
Helix 41
AE5
A
1501 1530Right-handed alpha
Helix 42
AE6
A
1532 1537Right-handed alpha
Helix 43
AE7
A
1537 1562Right-handed alpha
Helix 44
AE8
A
1568 1577Right-handed alpha
Helix 45
AE9
A
1580 1585Right-handed alpha
Helix 46
AF1
A
1586 1588Right-handed 310
Helix 47
AF2
A
1590 1629Right-handed alpha
Helix 48
AF3
A
1646 1659Right-handed alpha
Helix 49
AF4
A
1662 1672Right-handed alpha
Helix 50
AF5
A
1694 1726Right-handed alpha
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There are 3 sheets in PDB entry 9DBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
323 327anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1318 1320first strand
Strand 2
A
1309 1313anti-parallel
Strand 3
A
1341 1344anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
28 30anti-parallel
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