Analysis of interatomic Contacts of Structural Units in PDB entry:
9DBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DBQ entry

There are 2 chains in PDB entry 9DBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 237GLY 827
B
 SER 237GLY 827
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9DBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
237 254Right-handed alpha
Helix 2
AA2
A
258 295Right-handed alpha
Helix 3
AA3
A
298 317Right-handed alpha
Helix 4
AA4
A
324 356Right-handed alpha
Helix 5
AA5
A
357 364Right-handed alpha
Helix 6
AA6
A
365 390Right-handed alpha
Helix 7
AA7
A
390 409Right-handed alpha
Helix 8
AA8
A
410 459Right-handed alpha
Helix 9
AA9
A
459 467Right-handed alpha
Helix 10
AB1
A
468 522Right-handed alpha
Helix 11
AB2
A
526 542Right-handed alpha
Helix 12
AB3
A
543 545Right-handed 310
Helix 13
AB4
A
546 570Right-handed alpha
Helix 14
AB5
A
627 637Right-handed alpha
Helix 15
AB6
A
658 665Right-handed alpha
Helix 16
AB7
A
680 685Right-handed alpha
Helix 17
AB8
A
686 688Right-handed 310
Helix 18
AB9
A
692 704Right-handed alpha
Helix 19
AC1
A
705 712Right-handed alpha
Helix 20
AC2
A
728 744Right-handed alpha
Helix 21
AC3
A
758 773Right-handed alpha
Helix 22
AC4
A
807 815Right-handed alpha
Helix 23
AC5
A
816 827Right-handed alpha
Helix 24
AC6
B
238 254Right-handed alpha
Helix 25
AC7
B
258 295Right-handed alpha
Helix 26
AC8
B
298 317Right-handed alpha
Helix 27
AC9
B
324 356Right-handed alpha
Helix 28
AD1
B
357 364Right-handed alpha
Helix 29
AD2
B
365 390Right-handed alpha
Helix 30
AD3
B
390 409Right-handed alpha
Helix 31
AD4
B
410 459Right-handed alpha
Helix 32
AD5
B
459 467Right-handed alpha
Helix 33
AD6
B
468 522Right-handed alpha
Helix 34
AD7
B
526 542Right-handed alpha
Helix 35
AD8
B
543 545Right-handed 310
Helix 36
AD9
B
546 570Right-handed alpha
Helix 37
AE1
B
627 637Right-handed alpha
Helix 38
AE2
B
658 665Right-handed alpha
Helix 39
AE3
B
680 685Right-handed alpha
Helix 40
AE4
B
686 688Right-handed 310
Helix 41
AE5
B
692 704Right-handed alpha
Helix 42
AE6
B
705 712Right-handed alpha
Helix 43
AE7
B
728 744Right-handed alpha
Helix 44
AE8
B
758 773Right-handed alpha
Helix 45
AE9
B
807 815Right-handed alpha
Helix 46
AF1
B
816 827Right-handed alpha
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There are 8 sheets in PDB entry 9DBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 613first strand
Strand 2
A
590 593anti-parallel
Strand 3
A
646 649anti-parallel
Strand 4
A
652 653anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 622first strand
Strand 2
A
793 797parallel
Strand 3
A
802 806anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 669first strand
Strand 2
A
747 750parallel
Strand 3
A
777 778parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 679first strand
Strand 2
A
719 720anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 613first strand
Strand 2
B
590 593anti-parallel
Strand 3
B
646 649anti-parallel
Strand 4
B
652 653anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
619 622first strand
Strand 2
B
793 798parallel
Strand 3
B
801 806anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 669first strand
Strand 2
B
747 750parallel
Strand 3
B
777 778parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
678 679first strand
Strand 2
B
719 720anti-parallel
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