Analysis of interatomic Contacts of Structural Units in PDB entry:
9DBT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DBT entry

There are 12 chains in PDB entry 9DBT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 27	LEU 290
B	ILE 21	MET 119
F	HIS 27	SER 292
G	ILE 21	MET 119
I	HIS 27	ALA 280
J	ILE 21	MET 119
H	GLU 430	ILE 644
K	GLU 430	ILE 644
L	GLU 430	ILE 644
C	LEU 28	LEU 290
D	ILE 21	MET 119
E	GLU 430	ILE 644

There are 31 helices in PDB entry 9DBT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	75	Right-handed 310
Helix 2	AA2	A	82	106	Right-handed alpha
Helix 3	AA3	A	145	148	Right-handed 310
Helix 4	AA4	A	154	166	Right-handed alpha
Helix 5	AA5	A	169	180	Right-handed alpha
Helix 6	AA6	A	180	193	Right-handed alpha
Helix 7	AA7	A	193	198	Right-handed alpha
Helix 8	AA8	A	269	271	Right-handed 310
Helix 9	AA9	F	72	77	Right-handed 310
Helix 10	AB1	F	80	106	Right-handed alpha
Helix 11	AB2	F	145	148	Right-handed 310
Helix 12	AB3	F	154	166	Right-handed alpha
Helix 13	AB4	F	169	180	Right-handed alpha
Helix 14	AB5	F	180	193	Right-handed alpha
Helix 15	AB6	F	193	198	Right-handed alpha
Helix 16	AB7	I	71	76	Right-handed 310
Helix 17	AB8	I	82	106	Right-handed alpha
Helix 18	AB9	I	154	166	Right-handed alpha
Helix 19	AC1	I	169	180	Right-handed alpha
Helix 20	AC2	I	180	193	Right-handed alpha
Helix 21	AC3	I	193	198	Right-handed alpha
Helix 22	AC4	H	620	627	Right-handed 310
Helix 23	AC5	K	623	627	Right-handed 310
Helix 24	AC6	L	623	627	Right-handed 310
Helix 25	AC7	C	72	75	Right-handed 310
Helix 26	AC8	C	80	106	Right-handed alpha
Helix 27	AC9	C	154	166	Right-handed alpha
Helix 28	AD1	C	169	180	Right-handed alpha
Helix 29	AD2	C	180	198	Right-handed alpha
Helix 30	AD3	C	269	271	Right-handed 310
Helix 31	AD4	E	623	627	Right-handed 310

There are 35 sheets in PDB entry 9DBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	56	62	anti-parallel
Strand 3	A	47	53	anti-parallel
Strand 4	A	29	37	anti-parallel
Strand 5	A	112	121	anti-parallel
Strand 6	A	127	135	anti-parallel
Strand 7	A	138	144	anti-parallel
Strand 8	A	149	151	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	213	first strand
Strand 2	A	216	226	anti-parallel
Strand 3	A	257	266	anti-parallel
Strand 4	A	247	251	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	231	237	anti-parallel
Strand 3	A	273	279	anti-parallel
Strand 4	A	286	288	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	41	50	anti-parallel
Strand 3	B	82	90	anti-parallel
Strand 4	B	75	76	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	61	first strand
Strand 2	B	98	104	anti-parallel
Strand 3	B	111	114	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	70	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	47	53	anti-parallel
Strand 4	F	29	37	anti-parallel
Strand 5	F	112	121	anti-parallel
Strand 6	F	127	135	anti-parallel
Strand 7	F	138	144	anti-parallel
Strand 8	F	149	151	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	213	first strand
Strand 2	F	216	226	anti-parallel
Strand 3	F	257	266	anti-parallel
Strand 4	F	247	251	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	241	first strand
Strand 2	F	231	237	anti-parallel
Strand 3	F	273	279	anti-parallel
Strand 4	F	286	288	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	31	first strand
Strand 2	G	41	50	anti-parallel
Strand 3	G	82	90	anti-parallel
Strand 4	G	70	71	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	31	first strand
Strand 2	G	41	50	anti-parallel
Strand 3	G	82	90	anti-parallel
Strand 4	G	75	76	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	61	first strand
Strand 2	G	98	103	anti-parallel
Strand 3	G	111	114	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	61	62	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	29	37	anti-parallel
Strand 4	I	112	121	anti-parallel
Strand 5	I	127	135	anti-parallel
Strand 6	I	138	144	anti-parallel
Strand 7	I	149	151	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	221	226	first strand
Strand 2	I	257	261	anti-parallel
Strand 3	I	247	251	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	31	first strand
Strand 2	J	41	50	anti-parallel
Strand 3	J	82	90	anti-parallel
Strand 4	J	70	71	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	31	first strand
Strand 2	J	41	50	anti-parallel
Strand 3	J	82	90	anti-parallel
Strand 4	J	75	76	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	60	first strand
Strand 2	J	99	103	anti-parallel
Strand 3	J	111	114	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	474	477	first strand
Strand 2	H	466	471	anti-parallel
Strand 3	H	507	510	anti-parallel
Strand 4	H	513	526	anti-parallel
Strand 5	H	635	641	anti-parallel
Strand 6	H	431	438	anti-parallel
Strand 7	H	480	490	anti-parallel
Strand 8	H	587	597	anti-parallel
Strand 9	H	532	543	anti-parallel
Strand 10	H	513	526	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	454	first strand
Strand 2	H	547	554	anti-parallel
Strand 3	H	576	582	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	556	557	first strand
Strand 2	H	570	571	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	475	477	first strand
Strand 2	K	467	469	anti-parallel
Strand 3	K	507	509	anti-parallel
Strand 4	K	514	526	anti-parallel
Strand 5	K	532	543	anti-parallel
Strand 6	K	587	597	anti-parallel
Strand 7	K	483	490	anti-parallel
Strand 8	K	432	438	anti-parallel
Strand 9	K	635	640	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	454	first strand
Strand 2	K	547	554	anti-parallel
Strand 3	K	576	582	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	556	557	first strand
Strand 2	K	570	571	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	475	477	first strand
Strand 2	L	467	469	anti-parallel
Strand 3	L	507	509	anti-parallel
Strand 4	L	514	526	anti-parallel
Strand 5	L	533	543	anti-parallel
Strand 6	L	587	596	anti-parallel
Strand 7	L	480	490	anti-parallel
Strand 8	L	432	438	anti-parallel
Strand 9	L	635	640	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	454	first strand
Strand 2	L	547	554	anti-parallel
Strand 3	L	576	582	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	556	557	first strand
Strand 2	L	570	571	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	56	62	anti-parallel
Strand 3	C	47	53	anti-parallel
Strand 4	C	29	37	anti-parallel
Strand 5	C	112	121	anti-parallel
Strand 6	C	127	135	anti-parallel
Strand 7	C	138	144	anti-parallel
Strand 8	C	149	151	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	213	first strand
Strand 2	C	216	226	anti-parallel
Strand 3	C	257	266	anti-parallel
Strand 4	C	246	251	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	231	237	anti-parallel
Strand 3	C	273	279	anti-parallel
Strand 4	C	286	288	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	31	first strand
Strand 2	D	41	50	anti-parallel
Strand 3	D	82	90	anti-parallel
Strand 4	D	70	71	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	31	first strand
Strand 2	D	41	50	anti-parallel
Strand 3	D	82	90	anti-parallel
Strand 4	D	75	76	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	56	61	anti-parallel
Strand 3	D	98	103	anti-parallel
Strand 4	D	111	114	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	474	477	first strand
Strand 2	E	467	471	anti-parallel
Strand 3	E	507	509	anti-parallel
Strand 4	E	514	527	anti-parallel
Strand 5	E	533	543	anti-parallel
Strand 6	E	587	596	anti-parallel
Strand 7	E	480	490	anti-parallel
Strand 8	E	432	438	anti-parallel
Strand 9	E	635	640	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	454	first strand
Strand 2	E	547	554	anti-parallel
Strand 3	E	576	582	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	556	557	first strand
Strand 2	E	570	571	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DBT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DBT