Analysis of interatomic Contacts of Structural Units in PDB entry:
9DCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DCG entry

There are 2 chains in PDB entry 9DCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 109GLN 250
B
 ALA 109GLN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9DCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
133 141Right-handed alpha
Helix 2
AA2
A
142 149Right-handed alpha
Helix 3
AA3
A
165 176Right-handed alpha
Helix 4
AA4
A
179 189Right-handed alpha
Helix 5
AA5
A
199 218Right-handed alpha
Helix 6
AA6
A
238 250Right-handed alpha
Helix 7
AA7
B
133 142Right-handed alpha
Helix 8
AA8
B
142 149Right-handed alpha
Helix 9
AA9
B
165 176Right-handed alpha
Helix 10
AB1
B
179 189Right-handed alpha
Helix 11
AB2
B
200 217Right-handed alpha
Helix 12
AB3
B
238 250Right-handed alpha
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There are 2 sheets in PDB entry 9DCG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
151 157anti-parallel
Strand 3
A
123 129parallel
Strand 4
A
224 226anti-parallel
Strand 5
A
232 233anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
123 129parallel
Strand 4
B
224 226anti-parallel
Strand 5
B
232 234anti-parallel
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