Analysis of interatomic Contacts of Structural Units in PDB entry:
9DCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DCI entry

There are 2 chains in PDB entry 9DCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 16THR 769
B
 ALA 16THR 769
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 9DCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
47 63Right-handed alpha
Helix 4
AA4
A
76 91Right-handed alpha
Helix 5
AA5
A
103 114Right-handed alpha
Helix 6
AA6
A
115 118Right-handed 310
Helix 7
AA7
A
129 145Right-handed alpha
Helix 8
AA8
A
152 165Right-handed alpha
Helix 9
AA9
A
169 174Right-handed alpha
Helix 10
AB1
A
176 181Right-handed alpha
Helix 11
AB2
A
182 202Right-handed alpha
Helix 12
AB3
A
208 221Right-handed alpha
Helix 13
AB4
A
221 232Right-handed alpha
Helix 14
AB5
A
239 243Right-handed 310
Helix 15
AB6
A
244 256Right-handed alpha
Helix 16
AB7
A
273 277Right-handed 310
Helix 17
AB8
A
279 283Right-handed 310
Helix 18
AB9
A
286 291Right-handed alpha
Helix 19
AC1
A
291 296Right-handed alpha
Helix 20
AC2
A
311 323Right-handed alpha
Helix 21
AC3
A
350 367Right-handed alpha
Helix 22
AC4
A
372 374Right-handed 310
Helix 23
AC5
A
382 385Right-handed 310
Helix 24
AC6
A
386 396Right-handed alpha
Helix 25
AC7
A
407 410Right-handed 310
Helix 26
AC8
A
411 426Right-handed alpha
Helix 27
AC9
A
430 437Right-handed alpha
Helix 28
AD1
A
452 456Right-handed 310
Helix 29
AD2
A
465 473Right-handed alpha
Helix 30
AD3
A
479 498Right-handed alpha
Helix 31
AD4
A
503 515Right-handed alpha
Helix 32
AD5
A
516 524Right-handed alpha
Helix 33
AD6
A
526 552Right-handed alpha
Helix 34
AD7
A
569 580Right-handed alpha
Helix 35
AD8
A
581 585Right-handed 310
Helix 36
AD9
A
599 601Right-handed 310
Helix 37
AE1
A
627 643Right-handed alpha
Helix 38
AE2
A
670 675Right-handed alpha
Helix 39
AE3
A
743 747Right-handed 310
Helix 40
AE4
B
16 20Right-handed 310
Helix 41
AE5
B
24 33Right-handed alpha
Helix 42
AE6
B
47 62Right-handed alpha
Helix 43
AE7
B
76 92Right-handed alpha
Helix 44
AE8
B
103 114Right-handed alpha
Helix 45
AE9
B
129 145Right-handed alpha
Helix 46
AF1
B
152 165Right-handed alpha
Helix 47
AF2
B
169 174Right-handed alpha
Helix 48
AF3
B
176 181Right-handed alpha
Helix 49
AF4
B
182 201Right-handed alpha
Helix 50
AF5
B
208 221Right-handed alpha
Helix 51
AF6
B
221 232Right-handed alpha
Helix 52
AF7
B
239 243Right-handed 310
Helix 53
AF8
B
244 256Right-handed alpha
Helix 54
AF9
B
273 277Right-handed 310
Helix 55
AG1
B
279 283Right-handed 310
Helix 56
AG2
B
286 291Right-handed alpha
Helix 57
AG3
B
291 296Right-handed alpha
Helix 58
AG4
B
311 323Right-handed alpha
Helix 59
AG5
B
350 367Right-handed alpha
Helix 60
AG6
B
372 374Right-handed 310
Helix 61
AG7
B
382 385Right-handed 310
Helix 62
AG8
B
386 396Right-handed alpha
Helix 63
AG9
B
411 426Right-handed alpha
Helix 64
AH1
B
430 436Right-handed alpha
Helix 65
AH2
B
467 473Right-handed alpha
Helix 66
AH3
B
479 499Right-handed alpha
Helix 67
AH4
B
503 516Right-handed alpha
Helix 68
AH5
B
516 525Right-handed alpha
Helix 69
AH6
B
526 553Right-handed alpha
Helix 70
AH7
B
568 581Right-handed alpha
Helix 71
AH8
B
599 601Right-handed 310
Helix 72
AH9
B
627 643Right-handed alpha
Helix 73
AI1
B
670 675Right-handed alpha
Helix 74
AI2
B
743 747Right-handed 310
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There are 11 sheets in PDB entry 9DCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
70 74parallel
Strand 3
A
234 237parallel
Strand 4
A
267 272parallel
Strand 5
A
38 41parallel
Strand 6
A
300 303parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
204 206parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
593 597parallel
Strand 3
A
376 380parallel
Strand 4
A
608 612parallel
Strand 5
A
649 654parallel
Strand 6
A
343 348parallel
Strand 7
A
680 682parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 659first strand
Strand 2
A
662 665anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 761first strand
Strand 2
A
748 752anti-parallel
Strand 3
A
733 741anti-parallel
Strand 4
A
726 729anti-parallel
Strand 5
A
768 769anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
269 272parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 102first strand
Strand 2
B
70 74parallel
Strand 3
B
234 236parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
205 206parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 348first strand
Strand 2
B
648 654parallel
Strand 3
B
608 612parallel
Strand 4
B
376 380parallel
Strand 5
B
593 597parallel
Strand 6
B
400 402parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 659first strand
Strand 2
B
662 665anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
758 761first strand
Strand 2
B
749 752anti-parallel
Strand 3
B
733 739anti-parallel
Strand 4
B
726 729anti-parallel
Strand 5
B
768 769anti-parallel
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