Analysis of interatomic Contacts of Structural Units in PDB entry:
9DCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DCM entry

There are 2 chains in PDB entry 9DCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 3LYS 464
C
 LYS 3LYS 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 9DCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
23 39Right-handed alpha
Helix 2
AA2
B
89 116Right-handed alpha
Helix 3
AA3
B
129 144Right-handed alpha
Helix 4
AA4
B
157 168Right-handed alpha
Helix 5
AA5
B
177 184Right-handed alpha
Helix 6
AA6
B
201 212Right-handed alpha
Helix 7
AA7
B
216 218Right-handed 310
Helix 8
AA8
B
239 245Right-handed alpha
Helix 9
AA9
B
256 260Right-handed 310
Helix 10
AB1
B
262 267Right-handed 310
Helix 11
AB2
B
275 279Right-handed 310
Helix 12
AB3
B
294 307Right-handed alpha
Helix 13
AB4
B
321 337Right-handed alpha
Helix 14
AB5
B
348 359Right-handed alpha
Helix 15
AB6
B
372 380Right-handed alpha
Helix 16
AB7
B
391 396Right-handed 310
Helix 17
AB8
B
409 428Right-handed alpha
Helix 18
AB9
B
428 446Right-handed alpha
Helix 19
AC1
B
446 463Right-handed alpha
Helix 20
AC2
C
24 38Right-handed alpha
Helix 21
AC3
C
89 116Right-handed alpha
Helix 22
AC4
C
128 143Right-handed alpha
Helix 23
AC5
C
157 168Right-handed alpha
Helix 24
AC6
C
177 184Right-handed alpha
Helix 25
AC7
C
201 212Right-handed alpha
Helix 26
AC8
C
216 218Right-handed 310
Helix 27
AC9
C
239 244Right-handed alpha
Helix 28
AD1
C
261 265Right-handed 310
Helix 29
AD2
C
275 279Right-handed 310
Helix 30
AD3
C
290 293Right-handed 310
Helix 31
AD4
C
294 306Right-handed alpha
Helix 32
AD5
C
307 309Right-handed 310
Helix 33
AD6
C
321 334Right-handed alpha
Helix 34
AD7
C
348 359Right-handed alpha
Helix 35
AD8
C
372 380Right-handed alpha
Helix 36
AD9
C
392 397Right-handed alpha
Helix 37
AE1
C
409 427Right-handed alpha
Helix 38
AE2
C
428 446Right-handed alpha
Helix 39
AE3
C
446 462Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9DCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
42 50parallel
Strand 3
B
5 10parallel
Strand 4
B
121 124parallel
Strand 5
B
151 155parallel
Strand 6
B
196 199parallel
Strand 7
B
220 222parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 345first strand
Strand 2
B
312 317parallel
Strand 3
B
281 286parallel
Strand 4
B
361 363parallel
Strand 5
B
385 388parallel
Strand 6
B
402 405parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
42 50parallel
Strand 3
C
5 10parallel
Strand 4
C
121 124parallel
Strand 5
C
151 155parallel
Strand 6
C
196 199parallel
Strand 7
C
220 222parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 345first strand
Strand 2
C
312 317parallel
Strand 3
C
281 286parallel
Strand 4
C
361 363parallel
Strand 5
C
385 388parallel
Strand 6
C
402 405parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il