Analysis of interatomic Contacts of Structural Units in PDB entry:
9DCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DCQ entry

There is 1 chain in PDB entry 9DCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 59LEU 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9DCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 91Right-handed 310
Helix 2
AA2
A
151 155Right-handed 310
Helix 3
AA3
A
168 172Right-handed 310
Helix 4
AA4
A
176 180Right-handed 310
Helix 5
AA5
A
202 208Right-handed alpha
Helix 6
AA6
A
209 217Right-handed alpha
Helix 7
AA7
A
253 266Right-handed alpha
Helix 8
AA8
A
318 327Right-handed alpha
Helix 9
AA9
A
341 360Right-handed alpha
Helix 10
AB1
A
373 388Right-handed alpha
Helix 11
AB2
A
402 410Right-handed alpha
Helix 12
AB3
A
428 440Right-handed alpha
Helix 13
AB4
A
448 458Right-handed alpha
Helix 14
AB5
A
459 462Right-handed 310
Helix 15
AB6
A
464 466Right-handed 310
Helix 16
AB7
A
488 501Right-handed alpha
Helix 17
AB8
A
510 514Right-handed 310
Helix 18
AB9
A
522 527Right-handed 310
Helix 19
AC1
A
543 547Right-handed 310
Helix 20
AC2
A
548 566Right-handed alpha
Helix 21
AC3
A
568 574Right-handed alpha
Helix 22
AC4
A
613 616Right-handed 310
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There are 6 sheets in PDB entry 9DCQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
78 84anti-parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
101 107anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
139 146parallel
Strand 3
A
126 133anti-parallel
Strand 4
A
92 94anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
363 366parallel
Strand 3
A
270 275parallel
Strand 4
A
220 223parallel
Strand 5
A
164 167parallel
Strand 6
A
504 508parallel
Strand 7
A
468 470parallel
Strand 8
A
426 427parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
243 247anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 582first strand
Strand 2
A
585 591anti-parallel
Strand 3
A
596 602anti-parallel
Strand 4
A
647 652anti-parallel
Strand 5
A
626 627anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 611first strand
Strand 2
A
639 642anti-parallel
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