Analysis of interatomic Contacts of Structural Units in PDB entry:
9DCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DCY entry

There are 4 chains in PDB entry 9DCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 257
B
 ARG 3GLU 26
C
 GLY 0GLU 257
D
 ARG 3GLU 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9DCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 17Right-handed alpha
Helix 2
AA2
A
19 35Right-handed alpha
Helix 3
AA3
A
38 54Right-handed alpha
Helix 4
AA4
A
57 74Right-handed alpha
Helix 5
AA5
A
80 96Right-handed alpha
Helix 6
AA6
A
99 117Right-handed alpha
Helix 7
AA7
A
118 134Right-handed alpha
Helix 8
AA8
A
137 158Right-handed alpha
Helix 9
AA9
A
160 180Right-handed alpha
Helix 10
AB1
A
183 200Right-handed alpha
Helix 11
AB2
A
220 239Right-handed alpha
Helix 12
AB3
B
4 25Right-handed alpha
Helix 13
AB4
C
1 15Right-handed alpha
Helix 14
AB5
C
19 36Right-handed alpha
Helix 15
AB6
C
38 53Right-handed alpha
Helix 16
AB7
C
57 75Right-handed alpha
Helix 17
AB8
C
80 97Right-handed alpha
Helix 18
AB9
C
99 117Right-handed alpha
Helix 19
AC1
C
118 134Right-handed alpha
Helix 20
AC2
C
137 157Right-handed alpha
Helix 21
AC3
C
160 180Right-handed alpha
Helix 22
AC4
C
183 199Right-handed alpha
Helix 23
AC5
C
220 239Right-handed alpha
Helix 24
AC6
D
4 23Right-handed alpha
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There are 2 sheets in PDB entry 9DCY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
212 217anti-parallel
Strand 3
A
250 256anti-parallel
Strand 4
A
241 247anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 208first strand
Strand 2
C
211 217anti-parallel
Strand 3
C
250 255anti-parallel
Strand 4
C
242 247anti-parallel
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