Analysis of interatomic Contacts of Structural Units in PDB entry:
9DCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DCZ entry

There are 54 chains in PDB entry 9DCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ILE 6
A
 ARG 8LEU 13
A
 GLU 15GLU 15
A
 THR 17THR 17
A
 ASN 19ILE 22
A
 ARG 24VAL 45
A
 ALA 48LEU 53
A
 SER 55SER 55
A
 ASN 57GLU 59
A
 ILE 61GLU 82
A
 LEU 84LEU 91
A
 LEU 93SER 97
A
 ASP 99LEU 122
A
 THR 124VAL 125
A
 GLU 127SER 135
A
 ASP 137LEU 164
A
 GLU 166VAL 171
A
 GLU 173GLU 179
A
 GLY 181VAL 196
A
 GLY 198VAL 212
A
 VAL 214ILE 216
A
 GLY 218PHE 246
A
 GLY 248GLU 257
B
 GLY 0VAL 79
B
 VAL 81ILE 83
B
 GLY 85SER 102
B
 ILE 104GLU 124
C
 GLU 4ILE 6
C
 ARG 8LEU 13
C
 GLU 15GLU 15
C
 THR 17THR 17
C
 ASN 19ILE 22
C
 ARG 24VAL 45
C
 ALA 48LEU 53
C
 SER 55SER 55
C
 ASN 57GLU 59
C
 ILE 61GLU 82
C
 LEU 84LEU 91
C
 LEU 93SER 97
C
 ASP 99LEU 122
C
 THR 124VAL 125
C
 GLU 127SER 135
C
 ASP 137LEU 164
C
 GLU 166VAL 171
C
 GLU 173GLU 179
C
 GLY 181VAL 196
C
 GLY 198VAL 212
C
 VAL 214ILE 216
C
 GLY 218PHE 246
C
 GLY 248GLU 257
D
 GLU 1VAL 79
D
 VAL 81ILE 83
D
 GLY 85SER 102
D
 ILE 104GLU 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9DCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
19 34Right-handed alpha
Helix 3
AA3
A
38 54Right-handed alpha
Helix 4
AA4
A
57 75Right-handed alpha
Helix 5
AA5
A
77 79Right-handed 310
Helix 6
AA6
A
80 97Right-handed alpha
Helix 7
AA7
A
99 116Right-handed alpha
Helix 8
AA8
A
118 135Right-handed alpha
Helix 9
AA9
A
137 157Right-handed alpha
Helix 10
AB1
A
160 179Right-handed alpha
Helix 11
AB2
A
183 198Right-handed alpha
Helix 12
AB3
A
220 239Right-handed alpha
Helix 13
AB4
B
1 22Right-handed alpha
Helix 14
AB5
B
24 45Right-handed alpha
Helix 15
AB6
B
50 67Right-handed alpha
Helix 16
AB7
B
87 105Right-handed alpha
Helix 17
AB8
C
4 14Right-handed alpha
Helix 18
AB9
C
19 34Right-handed alpha
Helix 19
AC1
C
37 42Right-handed alpha
Helix 20
AC2
C
44 54Right-handed alpha
Helix 21
AC3
C
57 75Right-handed alpha
Helix 22
AC4
C
81 97Right-handed alpha
Helix 23
AC5
C
99 116Right-handed alpha
Helix 24
AC6
C
118 135Right-handed alpha
Helix 25
AC7
C
137 157Right-handed alpha
Helix 26
AC8
C
160 180Right-handed alpha
Helix 27
AC9
C
183 199Right-handed alpha
Helix 28
AD1
C
220 239Right-handed alpha
Helix 29
AD2
D
2 17Right-handed alpha
Helix 30
AD3
D
24 45Right-handed alpha
Helix 31
AD4
D
50 67Right-handed alpha
Helix 32
AD5
D
87 106Right-handed alpha
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There are 2 sheets in PDB entry 9DCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
250 256anti-parallel
Strand 4
A
241 247anti-parallel
Strand 5
B
108 114anti-parallel
Strand 6
B
117 123anti-parallel
Strand 7
B
78 84anti-parallel
Strand 8
B
69 75anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 208first strand
Strand 2
C
211 216anti-parallel
Strand 3
C
250 256anti-parallel
Strand 4
C
241 247anti-parallel
Strand 5
D
108 114anti-parallel
Strand 6
D
117 123anti-parallel
Strand 7
D
78 84anti-parallel
Strand 8
D
69 75anti-parallel
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