Analysis of interatomic Contacts of Structural Units in PDB entry:
9DD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DD1 entry

There are 33 chains in PDB entry 9DD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ILE 6
A
 ARG 8LEU 13
A
 GLU 15GLU 15
A
 THR 17THR 17
A
 ASN 19ILE 22
A
 ARG 24VAL 45
A
 ALA 48LEU 53
A
 SER 55SER 55
A
 ASN 57GLU 59
A
 ILE 61GLU 82
A
 LEU 84LEU 91
A
 LEU 93SER 97
A
 ASP 99LEU 122
A
 THR 124VAL 125
A
 GLU 127SER 135
A
 ASP 137LEU 164
A
 GLU 166VAL 171
A
 GLU 173GLU 179
A
 GLY 181VAL 196
A
 GLY 198VAL 212
A
 VAL 214ILE 216
A
 GLY 218PHE 246
A
 GLY 248VAL 255
B
 ARG 3ARG 3
B
 GLU 6ALA 8
B
 GLU 10ALA 15
B
 LEU 18GLU 20
B
 LEU 22ALA 23
B
 GLU 25GLU 25
C
 GLU 2VAL 79
C
 VAL 81ILE 83
C
 GLY 85SER 102
C
 ILE 104VAL 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9DD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
19 36Right-handed alpha
Helix 3
AA3
A
38 53Right-handed alpha
Helix 4
AA4
A
57 76Right-handed alpha
Helix 5
AA5
A
80 97Right-handed alpha
Helix 6
AA6
A
99 114Right-handed alpha
Helix 7
AA7
A
118 133Right-handed alpha
Helix 8
AA8
A
137 158Right-handed alpha
Helix 9
AA9
A
160 181Right-handed alpha
Helix 10
AB1
A
183 200Right-handed alpha
Helix 11
AB2
A
220 239Right-handed alpha
Helix 12
AB3
B
4 21Right-handed alpha
Helix 13
AB4
B
22 24Right-handed 310
Helix 14
AB5
C
3 18Right-handed alpha
Helix 15
AB6
C
27 46Right-handed alpha
Helix 16
AB7
C
50 67Right-handed alpha
Helix 17
AB8
C
87 106Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9DD1.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
243 246anti-parallel
Strand 5
C
110 114anti-parallel
Strand 6
C
117 122anti-parallel
Strand 7
C
79 84anti-parallel
Strand 8
C
69 74anti-parallel
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