Analysis of interatomic Contacts of Structural Units in PDB entry:
9DD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DD6 entry

There are 9 chains in PDB entry 9DD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	THR 109	THR 721
F	THR 109	THR 721
G	THR 109	THR 721
H	GLN 1	SER 116
I	GLN 1	SER 116
J	GLN 1	SER 116
L	ASP 1	LYS 107
M	ASP 1	LYS 107
N	ASP 1	LYS 107

There are 45 helices in PDB entry 9DD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	193	200	Right-handed alpha
Helix 2	AA2	E	200	205	Right-handed alpha
Helix 3	AA3	E	223	227	Right-handed 310
Helix 4	AA4	E	306	310	Right-handed 310
Helix 5	AA5	E	315	317	Right-handed 310
Helix 6	AA6	E	403	408	Right-handed 310
Helix 7	AA7	E	409	429	Right-handed alpha
Helix 8	AA8	E	458	473	Right-handed alpha
Helix 9	AA9	E	510	546	Right-handed alpha
Helix 10	AB1	E	546	556	Right-handed alpha
Helix 11	AB2	E	577	579	Right-handed 310
Helix 12	AB3	E	660	664	Right-handed 310
Helix 13	AB4	E	686	691	Right-handed alpha
Helix 14	AB5	E	701	721	Right-handed alpha
Helix 15	AB6	F	193	200	Right-handed alpha
Helix 16	AB7	F	200	205	Right-handed alpha
Helix 17	AB8	F	223	227	Right-handed 310
Helix 18	AB9	F	306	310	Right-handed 310
Helix 19	AC1	F	315	317	Right-handed 310
Helix 20	AC2	F	403	408	Right-handed 310
Helix 21	AC3	F	409	429	Right-handed alpha
Helix 22	AC4	F	458	473	Right-handed alpha
Helix 23	AC5	F	510	546	Right-handed alpha
Helix 24	AC6	F	546	556	Right-handed alpha
Helix 25	AC7	F	577	579	Right-handed 310
Helix 26	AC8	F	660	664	Right-handed 310
Helix 27	AC9	F	686	691	Right-handed alpha
Helix 28	AD1	F	701	721	Right-handed alpha
Helix 29	AD2	G	193	200	Right-handed alpha
Helix 30	AD3	G	200	205	Right-handed alpha
Helix 31	AD4	G	223	227	Right-handed 310
Helix 32	AD5	G	306	310	Right-handed 310
Helix 33	AD6	G	315	317	Right-handed 310
Helix 34	AD7	G	403	408	Right-handed 310
Helix 35	AD8	G	409	429	Right-handed alpha
Helix 36	AD9	G	458	473	Right-handed alpha
Helix 37	AE1	G	510	546	Right-handed alpha
Helix 38	AE2	G	546	556	Right-handed alpha
Helix 39	AE3	G	577	579	Right-handed 310
Helix 40	AE4	G	660	664	Right-handed 310
Helix 41	AE5	G	686	691	Right-handed alpha
Helix 42	AE6	G	701	721	Right-handed alpha
Helix 43	AE7	H	87	91	Right-handed 310
Helix 44	AE8	I	87	91	Right-handed 310
Helix 45	AE9	J	87	91	Right-handed 310

There are 48 sheets in PDB entry 9DD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	115	first strand
Strand 2	E	574	576	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	559	563	first strand
Strand 2	E	568	572	anti-parallel
Strand 3	E	123	126	anti-parallel
Strand 4	F	665	666	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	395	397	first strand
Strand 2	E	383	388	anti-parallel
Strand 3	E	366	380	anti-parallel
Strand 4	E	140	152	anti-parallel
Strand 5	E	448	457	anti-parallel
Strand 6	E	433	435	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	395	397	first strand
Strand 2	E	383	388	anti-parallel
Strand 3	E	366	380	anti-parallel
Strand 4	E	140	152	anti-parallel
Strand 5	E	448	457	anti-parallel
Strand 6	E	440	444	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	190	first strand
Strand 2	E	157	169	anti-parallel
Strand 3	E	268	280	anti-parallel
Strand 4	E	287	289	anti-parallel
Strand 5	E	294	295	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	236	first strand
Strand 2	E	246	248	anti-parallel
Strand 3	E	268	280	anti-parallel
Strand 4	E	157	169	anti-parallel
Strand 5	E	351	355	anti-parallel
Strand 6	E	342	346	anti-parallel
Strand 7	E	319	322	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	208	first strand
Strand 2	E	231	233	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	214	first strand
Strand 2	E	219	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	581	583	first strand
Strand 2	E	601	604	anti-parallel
Strand 3	E	613	617	anti-parallel
Strand 4	E	623	624	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	595	597	first strand
Strand 2	E	630	632	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	638	643	first strand
Strand 2	E	646	651	anti-parallel
Strand 3	E	654	659	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	665	666	first strand
Strand 2	G	123	126	parallel
Strand 3	G	568	572	anti-parallel
Strand 4	G	559	563	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	115	first strand
Strand 2	F	574	576	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	559	563	first strand
Strand 2	F	568	572	anti-parallel
Strand 3	F	123	126	anti-parallel
Strand 4	G	665	666	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	397	first strand
Strand 2	F	383	388	anti-parallel
Strand 3	F	366	380	anti-parallel
Strand 4	F	140	152	anti-parallel
Strand 5	F	448	457	anti-parallel
Strand 6	F	433	435	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	397	first strand
Strand 2	F	383	388	anti-parallel
Strand 3	F	366	380	anti-parallel
Strand 4	F	140	152	anti-parallel
Strand 5	F	448	457	anti-parallel
Strand 6	F	440	444	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	190	first strand
Strand 2	F	157	169	anti-parallel
Strand 3	F	268	280	anti-parallel
Strand 4	F	287	289	anti-parallel
Strand 5	F	294	295	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	236	first strand
Strand 2	F	246	248	anti-parallel
Strand 3	F	268	280	anti-parallel
Strand 4	F	157	169	anti-parallel
Strand 5	F	351	355	anti-parallel
Strand 6	F	342	346	anti-parallel
Strand 7	F	319	322	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	208	first strand
Strand 2	F	231	233	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	214	first strand
Strand 2	F	219	222	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	581	583	first strand
Strand 2	F	601	604	anti-parallel
Strand 3	F	613	617	anti-parallel
Strand 4	F	623	624	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	595	597	first strand
Strand 2	F	630	632	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	638	643	first strand
Strand 2	F	646	651	anti-parallel
Strand 3	F	654	659	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	113	115	first strand
Strand 2	G	574	576	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	395	397	first strand
Strand 2	G	383	388	anti-parallel
Strand 3	G	366	380	anti-parallel
Strand 4	G	140	152	anti-parallel
Strand 5	G	448	457	anti-parallel
Strand 6	G	433	435	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	395	397	first strand
Strand 2	G	383	388	anti-parallel
Strand 3	G	366	380	anti-parallel
Strand 4	G	140	152	anti-parallel
Strand 5	G	448	457	anti-parallel
Strand 6	G	440	444	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	188	190	first strand
Strand 2	G	157	169	anti-parallel
Strand 3	G	268	280	anti-parallel
Strand 4	G	287	289	anti-parallel
Strand 5	G	294	295	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	236	first strand
Strand 2	G	246	248	anti-parallel
Strand 3	G	268	280	anti-parallel
Strand 4	G	157	169	anti-parallel
Strand 5	G	351	355	anti-parallel
Strand 6	G	342	346	anti-parallel
Strand 7	G	319	322	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	208	first strand
Strand 2	G	231	233	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	211	214	first strand
Strand 2	G	219	222	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	581	583	first strand
Strand 2	G	601	604	anti-parallel
Strand 3	G	613	617	anti-parallel
Strand 4	G	623	624	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	595	597	first strand
Strand 2	G	630	632	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	638	643	first strand
Strand 2	G	646	651	anti-parallel
Strand 3	G	654	659	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	110	114	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	47	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	19	26	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	110	114	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	35	40	anti-parallel
Strand 5	I	47	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	19	26	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	13	first strand
Strand 2	J	110	114	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	35	40	anti-parallel
Strand 5	J	47	52	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	44	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	44	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DD6