Analysis of interatomic Contacts of Structural Units in PDB entry:
9DDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DDA entry

There are 3 chains in PDB entry 9DDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 109	THR 721
B	THR 109	THR 721
C	THR 109	THR 721

There are 39 helices in PDB entry 9DDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	193	199	Right-handed alpha
Helix 2	AA2	A	223	227	Right-handed 310
Helix 3	AA3	A	315	317	Right-handed 310
Helix 4	AA4	A	403	407	Right-handed 310
Helix 5	AA5	A	408	429	Right-handed alpha
Helix 6	AA6	A	458	473	Right-handed alpha
Helix 7	AA7	A	502	507	Right-handed alpha
Helix 8	AA8	A	510	546	Right-handed alpha
Helix 9	AA9	A	546	556	Right-handed alpha
Helix 10	AB1	A	577	581	Right-handed 310
Helix 11	AB2	A	662	664	Right-handed 310
Helix 12	AB3	A	686	691	Right-handed alpha
Helix 13	AB4	A	701	721	Right-handed alpha
Helix 14	AB5	B	193	199	Right-handed alpha
Helix 15	AB6	B	223	227	Right-handed 310
Helix 16	AB7	B	315	317	Right-handed 310
Helix 17	AB8	B	403	407	Right-handed 310
Helix 18	AB9	B	408	428	Right-handed alpha
Helix 19	AC1	B	458	473	Right-handed alpha
Helix 20	AC2	B	502	507	Right-handed alpha
Helix 21	AC3	B	510	546	Right-handed alpha
Helix 22	AC4	B	546	556	Right-handed alpha
Helix 23	AC5	B	577	579	Right-handed 310
Helix 24	AC6	B	662	664	Right-handed 310
Helix 25	AC7	B	686	691	Right-handed alpha
Helix 26	AC8	B	701	721	Right-handed alpha
Helix 27	AC9	C	193	199	Right-handed alpha
Helix 28	AD1	C	223	227	Right-handed 310
Helix 29	AD2	C	315	317	Right-handed 310
Helix 30	AD3	C	403	407	Right-handed 310
Helix 31	AD4	C	408	429	Right-handed alpha
Helix 32	AD5	C	458	473	Right-handed alpha
Helix 33	AD6	C	502	507	Right-handed alpha
Helix 34	AD7	C	510	546	Right-handed alpha
Helix 35	AD8	C	546	556	Right-handed alpha
Helix 36	AD9	C	577	581	Right-handed 310
Helix 37	AE1	C	662	664	Right-handed 310
Helix 38	AE2	C	686	691	Right-handed alpha
Helix 39	AE3	C	701	721	Right-handed alpha

There are 30 sheets in PDB entry 9DDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	576	first strand
Strand 2	A	113	115	anti-parallel
Strand 3	A	622	624	parallel
Strand 4	A	613	617	anti-parallel
Strand 5	A	601	604	anti-parallel
Strand 6	A	582	583	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	563	first strand
Strand 2	A	568	572	anti-parallel
Strand 3	A	124	127	anti-parallel
Strand 4	C	665	667	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	383	388	anti-parallel
Strand 3	A	366	380	anti-parallel
Strand 4	A	140	152	anti-parallel
Strand 5	A	449	457	anti-parallel
Strand 6	A	433	435	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	383	388	anti-parallel
Strand 3	A	366	380	anti-parallel
Strand 4	A	140	152	anti-parallel
Strand 5	A	449	457	anti-parallel
Strand 6	A	440	443	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	287	289	anti-parallel
Strand 4	A	294	295	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	268	274	anti-parallel
Strand 4	A	247	248	anti-parallel
Strand 5	A	235	236	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	351	355	anti-parallel
Strand 4	A	342	346	anti-parallel
Strand 5	A	319	322	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	231	233	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	215	first strand
Strand 2	A	218	222	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	643	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	654	660	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	667	first strand
Strand 2	B	124	127	parallel
Strand 3	B	568	572	anti-parallel
Strand 4	B	559	563	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	576	first strand
Strand 2	B	113	115	anti-parallel
Strand 3	B	622	624	parallel
Strand 4	B	613	617	anti-parallel
Strand 5	B	601	604	anti-parallel
Strand 6	B	581	583	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	384	388	anti-parallel
Strand 3	B	366	379	anti-parallel
Strand 4	B	140	152	anti-parallel
Strand 5	B	449	457	anti-parallel
Strand 6	B	433	435	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	384	388	anti-parallel
Strand 3	B	366	379	anti-parallel
Strand 4	B	140	152	anti-parallel
Strand 5	B	449	457	anti-parallel
Strand 6	B	440	443	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	287	289	anti-parallel
Strand 4	B	294	295	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	162	169	anti-parallel
Strand 3	B	268	274	anti-parallel
Strand 4	B	247	248	anti-parallel
Strand 5	B	235	236	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	162	169	anti-parallel
Strand 3	B	351	355	anti-parallel
Strand 4	B	342	346	anti-parallel
Strand 5	B	319	322	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	231	233	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	215	first strand
Strand 2	B	218	222	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	643	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	654	660	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	C	124	127	parallel
Strand 3	C	568	572	anti-parallel
Strand 4	C	559	563	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	576	first strand
Strand 2	C	113	115	anti-parallel
Strand 3	C	622	624	parallel
Strand 4	C	613	617	anti-parallel
Strand 5	C	601	604	anti-parallel
Strand 6	C	582	583	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	396	first strand
Strand 2	C	384	388	anti-parallel
Strand 3	C	366	379	anti-parallel
Strand 4	C	140	152	anti-parallel
Strand 5	C	449	457	anti-parallel
Strand 6	C	433	435	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	396	first strand
Strand 2	C	384	388	anti-parallel
Strand 3	C	366	379	anti-parallel
Strand 4	C	140	152	anti-parallel
Strand 5	C	449	457	anti-parallel
Strand 6	C	440	443	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	287	289	anti-parallel
Strand 4	C	294	295	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	268	274	anti-parallel
Strand 4	C	247	248	anti-parallel
Strand 5	C	235	236	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	351	355	anti-parallel
Strand 4	C	342	346	anti-parallel
Strand 5	C	319	322	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	231	233	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	215	first strand
Strand 2	C	218	222	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	642	first strand
Strand 2	C	646	651	anti-parallel
Strand 3	C	654	660	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DDA